Strain identifier
BacDive ID: 130461
Type strain: 
Species: Psychrobacter ciconiae
Strain Designation: 176/10
Strain history: CIP <- 2014, P. Kämpfer, Giessen Univ., Giessen, Germany: strain 176/10
NCBI tax ID(s): 1553449 (species)
version 9 (current version)
General
@ref: 21746
BacDive-ID: 130461
DSM-Number: 28412
keywords: 16S sequence, Bacteria, Gram-negative, oval-shaped
description: Psychrobacter ciconiae 176/10 is a Gram-negative, oval-shaped bacterium that was isolated from choana of white stork nestling ).
NCBI tax id
- NCBI tax id: 1553449
- Matching level: species
strain history
| @ref | history |
|---|---|
| 41744 | 2014, P. Kämpfer, Giessen Univ., Giessen, Germany: strain 176/10 |
| 21746 | <- P. Kämpfer, Univ. Giessen, Germany; 176/10 <- R. K. J. Wilharm, Robert-Koch-Institut, Wernigerode, Germany |
| 118280 | CIP <- 2014, P. Kämpfer, Giessen Univ., Giessen, Germany: strain 176/10 |
doi: 10.13145/bacdive130461.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Psychrobacter
- species: Psychrobacter ciconiae
- full scientific name: Psychrobacter ciconiae Kämpfer et al. 2015
@ref: 21746
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Psychrobacter
species: Psychrobacter ciconiae
full scientific name: Psychrobacter ciconiae Kämpfer et al. 2015
strain designation: 176/10
type strain: yes
Morphology
cell morphology
- @ref: 118280
- gram stain: negative
- cell shape: oval-shaped
- motility: no
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 41744 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
| 21746 | TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) | yes | Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water | https://mediadive.dsmz.de/medium/545 |
| 118280 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 41744 | positive | growth | 30 |
| 21746 | positive | growth | 28 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|---|
| 21746 | choana of white stork nestling (Ciconia ciconia)) | Ciconia ciconia | Klopot (52° 7' 51'' N 14° 42' 8'' E) | Poland | POL | Europe | 52.1308 | 14.7022 |
| 118280 | Animal, Stork | Poland | POL | Europe |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Birds | |
| #Host Body-Site | #Oral cavity and airways | #Airways |
Safety information
risk assessment
| @ref | biosafety level | biosafety level comment |
|---|---|---|
| 21746 | 1 | Risk group (German classification) |
| 118280 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 21746
- description: Psychrobacter ciconiae strain 176/10 16S ribosomal RNA gene, partial sequence
- accession: KM486054
- length: 1417
- database: nuccore
- NCBI tax ID: 1553449
External links
@ref: 21746
culture collection no.: DSM 28412, CCM 8519, CIP 110777, LMG 28175
straininfo link
- @ref: 88990
- straininfo: 406855
literature
- topic: Phylogeny
- Pubmed-ID: 25479953
- title: Psychrobacter ciconiae sp. nov., isolated from white storks (Ciconia ciconia).
- authors: Kampfer P, Jerzak L, Wilharm G, Golke J, Busse HJ, Glaeser SP
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000013
- year: 2014
- mesh: Animals, Bacterial Typing Techniques, Birds/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Poland, Psychrobacter/*classification/genetics/isolation & purification, Putrescine/chemistry, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spermidine/chemistry, Ubiquinone/chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21746 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28412 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28412) | |
| 41744 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/30589 | ||
| 88990 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406855.1 | |
| 118280 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110777 | Collection of Institut Pasteur (CIP 110777) |