Strain identifier

BacDive ID: 130458

Type strain: Yes

Species: Psychrobacter sanguinis

Strain Designation: 13983

Strain history: CIP <- 2015, DSMZ <- W.J. Wolfgang, Wadsworth Center, USA: strain 13983

NCBI tax ID(s): 861445 (species)

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General

@ref: 21743

BacDive-ID: 130458

DSM-Number: 23635

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, ovoid-shaped

description: Psychrobacter sanguinis 13983 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from human blood of an 84-year-old male.

NCBI tax id

  • NCBI tax id: 861445
  • Matching level: species

strain history

@refhistory
21743<- W. J. Wolfgang, Wadsworth Center, NYS Dept. Health, USA; 13983 <- NSLIJ, New York
122428CIP <- 2015, DSMZ <- W.J. Wolfgang, Wadsworth Center, USA: strain 13983

doi: 10.13145/bacdive130458.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Psychrobacter
  • species: Psychrobacter sanguinis
  • full scientific name: Psychrobacter sanguinis Wirth et al. 2012

@ref: 21743

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Psychrobacter

species: Psychrobacter sanguinis

full scientific name: Psychrobacter sanguinis Wirth et al. 2012

strain designation: 13983

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
30072negative1.0-2.0 µm0.5-1.0 µmovoid-shapedno
122428negativecoccus-shapedno

colony morphology

  • @ref: 21743
  • type of hemolysis: gamma
  • incubation period: 1-2 days

pigmentation

  • @ref: 30072
  • production: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21743BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
21743COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
36202MEDIUM 45 - for Columbia agar with sheep bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml)
122428CIP Medium 45yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45

culture temp

@refgrowthtypetemperaturerange
21743positivegrowth37mesophilic
30072positivegrowth04-37
30072positiveoptimum30-37mesophilic
36202positivegrowth37mesophilic
62102positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 62102
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3007217632nitrate+reduction
6837717634D-glucose-builds acid from
6837715824D-fructose-builds acid from
6837717306maltose-builds acid from
6837717992sucrose-builds acid from
6837716199urea+hydrolysis

enzymes

@refvalueactivityec
21743catalase+1.11.1.6
21743cytochrome-c oxidase+1.9.3.1
30072alkaline phosphatase+3.1.3.1
30072catalase+1.11.1.6
30072cytochrome oxidase+1.9.3.1
30072urease+3.5.1.5
68377beta-galactosidase-3.2.1.23
68377lipase+
68377urease+3.5.1.5

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
21743-----+++--+-+
21743+-----+++--+-
21743+-----+++--+-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudesampling date
21743human blood of an 84-year-old maleNew York, Queens CountyUSAUSANorth America40.7421-73.7694
62102Human blood,84-yr-old maleLong Island,New York State,Queens C.USAUSANorth America2004-10-20
122428Human, Blood of an 84-year-old maleQueens County, New YorkUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Host#Human#Male
#Host Body Product#Fluids#Blood

taxonmaps

  • @ref: 69479
  • File name: preview.99_5055.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_80;96_193;97_1308;98_3777;99_5055&stattab=map
  • Last taxonomy: Psychrobacter
  • 16S sequence: HM212668
  • Sequence Identity:
  • Total samples: 25409
  • soil counts: 2596
  • aquatic counts: 5137
  • animal counts: 17078
  • plant counts: 598

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
217431Risk group (German classification)
1224281Risk group (French classification)

Sequence information

16S sequences

  • @ref: 21743
  • description: Psychrobacter sanguinis strain 13983 16S ribosomal RNA gene, partial sequence
  • accession: HM212668
  • length: 1457
  • database: ena
  • NCBI tax ID: 861445

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Psychrobacter sanguinis strain FDAARGOS_1598861445.15completepatric861445
66792Psychrobacter sanguinis strain FDAARGOS_1598861445.12completepatric861445

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno91.965yes
flagellatedno93.452no
gram-positiveno97.911no
anaerobicno98.812yes
halophileyes61.069no
spore-formingno97.366no
thermophileno98.583yes
glucose-utilno56.108no
aerobicyes87.629yes
glucose-fermentno94.447no

External links

@ref: 21743

culture collection no.: DSM 23635, CCUG 59771, CIP 110993

straininfo link

  • @ref: 88987
  • straininfo: 403199

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21317274Psychrobacter sanguinis sp. nov., recovered from four clinical specimens over a 4-year period.Wirth SE, Ayala-Del-Rio HL, Cole JA, Kohlerschmidt DJ, Musser KA, Sepulveda-Torres LDC, Thompson LM, Wolfgang WJInt J Syst Evol Microbiol10.1099/ijs.0.029058-02011Bacteremia/microbiology, Bacterial Typing Techniques, Blood/microbiology, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Humans, Molecular Sequence Data, Moraxellaceae Infections/*microbiology, Nucleic Acid Hybridization, Phylogeny, Psychrobacter/*classification/genetics/*isolation & purification/physiology, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics, Sequence Analysis, DNAPathogenicity
Phylogeny31617840Psychrobacter pygoscelis sp. nov. isolated from the penguin Pygoscelis papua.Kampfer P, Glaeser SP, Irgang R, Fernandez-Negrete G, Poblete-Morales M, Fuentes-Messina D, Cortez-San Martin M, Avendano-Herrera RInt J Syst Evol Microbiol10.1099/ijsem.0.0037392020Animals, Antarctic Regions, Bacterial Typing Techniques, Base Composition, Chile, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, Psychrobacter/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spheniscidae/*microbiology, Trachea/*microbiologyTranscriptome

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21743Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-23635Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23635)
30072Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172643128776041
36202Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/34600
62102Curators of the CCUGhttps://www.ccug.se/strain?id=59771Culture Collection University of Gothenburg (CCUG) (CCUG 59771)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68377Automatically annotated from API NH
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88987Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403199.1
122428Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110993Collection of Institut Pasteur (CIP 110993)