Strain identifier
BacDive ID: 130386
Type strain: 
Species: Listeria floridensis
Strain history: <- M. Wiedmann, Food Science, Cornell Univ., Ithaca, USA; FSL S10-1187 <- L. Strawn
NCBI tax ID(s): 1265817 (strain), 1494962 (species)
version 8.1 (current version)
General
@ref: 21626
BacDive-ID: 130386
DSM-Number: 26687
keywords: 16S sequence, Bacteria, mesophilic
description: Listeria floridensis DSM 26687 is a mesophilic bacterium that was isolated from running water.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1494962 | species |
| 1265817 | strain |
strain history
- @ref: 21626
- history: <- M. Wiedmann, Food Science, Cornell Univ., Ithaca, USA; FSL S10-1187 <- L. Strawn
doi: 10.13145/bacdive130386.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Listeriaceae
- genus: Listeria
- species: Listeria floridensis
- full scientific name: Listeria floridensis Den Bakker et al. 2014
@ref: 21626
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Listeriaceae
genus: Listeria
species: Listeria floridensis
full scientific name: Listeria floridensis den Bakker et al. 2014
type strain: yes
Morphology
colony morphology
- @ref: 21626
- type of hemolysis: gamma
- incubation period: 1-2 days
Culture and growth conditions
culture medium
- @ref: 21626
- name: BHI MEDIUM (DSMZ Medium 215)
- growth: yes
- link: https://mediadive.dsmz.de/medium/215
- composition: Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
culture temp
- @ref: 21626
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68376 | 4853 | esculin | + | hydrolysis |
| 68376 | 65327 | D-xylose | + | builds acid from |
| 68376 | 62345 | L-rhamnose | + | builds acid from |
| 68376 | 320061 | methyl alpha-D-glucopyranoside | + | builds acid from |
| 68376 | 16988 | D-ribose | - | builds acid from |
| 68376 | 29042 | glucose 1-phosphate | - | builds acid from |
| 68376 | 16443 | D-tagatose | - | builds acid from |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 21626 | catalase | + | 1.11.1.6 |
| 21626 | cytochrome-c oxidase | - | 1.9.3.1 |
| 68376 | alpha-mannosidase | - | 3.2.1.24 |
| 68376 | beta-glucosidase | + | 3.2.1.21 |
API LIST
| @ref | DIM | ESC | alpha MAN | DARL | XYL | RHA | MDG | RIB | G1P | TAG |
|---|---|---|---|---|---|---|---|---|---|---|
| 21626 | +/- | + | - | +/- | + | + | + | - | - | - |
| 21626 | - | + | - | +/- | + | + | + | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 21626
- sample type: running water
- geographic location: Florida
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
taxonmaps
- @ref: 69479
- File name: preview.99_4143.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_32;96_1495;97_1783;98_3130;99_4143&stattab=map
- Last taxonomy: Listeria floridensis subclade
- 16S sequence: JX961636
- Sequence Identity:
- Total samples: 956
- soil counts: 16
- aquatic counts: 66
- animal counts: 847
- plant counts: 27
Safety information
risk assessment
- @ref: 21626
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21626
- description: Listeria floridensis FSL S10-1187 16S ribosomal RNA gene, partial sequence
- accession: JX961636
- length: 1475
- database: ena
- NCBI tax ID: 1265817
GC content
- @ref: 21626
- GC-content: 41.8
- method: sequence analysis
External links
@ref: 21626
culture collection no.: DSM 26687, LMG 28121, BEI NR-42632, FSL S10-1187
straininfo link
- @ref: 88918
- straininfo: 391763
literature
- topic: Phylogeny
- Pubmed-ID: 24599893
- title: Listeria floridensis sp. nov., Listeria aquatica sp. nov., Listeria cornellensis sp. nov., Listeria riparia sp. nov. and Listeria grandensis sp. nov., from agricultural and natural environments.
- authors: den Bakker HC, Warchocki S, Wright EM, Allred AF, Ahlstrom C, Manuel CS, Stasiewicz MJ, Burrell A, Roof S, Strawn LK, Fortes E, Nightingale KK, Kephart D, Wiedmann M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.052720-0
- year: 2014
- mesh: Agriculture, Bacterial Typing Techniques, Colorado, DNA, Bacterial/genetics, Florida, Listeria/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Water Microbiology
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21626 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26687 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26687) | |
| 68376 | Automatically annotated from API LIST | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 88918 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID391763.1 |