Strain identifier
BacDive ID: 130385
Type strain: 
Species: Weissella uvarum
Strain Designation: B18NM42
Strain history: <- A. Nisiotou, Hellenic Agricultural Org. "DEMETER", Wine Inst. of Athens, Greece; B18NM42
NCBI tax ID(s): 1479233 (species)
version 8.1 (current version)
General
@ref: 21986
BacDive-ID: 130385
DSM-Number: 28060
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic
description: Weissella uvarum B18NM42 is a microaerophile, mesophilic bacterium that was isolated from grapes from Vitis vinifera L. 'Agiorgitiko'.
NCBI tax id
- NCBI tax id: 1479233
- Matching level: species
strain history
- @ref: 21986
- history: <- A. Nisiotou, Hellenic Agricultural Org. "DEMETER", Wine Inst. of Athens, Greece; B18NM42
doi: 10.13145/bacdive130385.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Weissella
- species: Weissella uvarum
- full scientific name: Weissella uvarum Nisiotou et al. 2014
@ref: 21986
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Leuconostocaceae
genus: Weissella
species: Weissella uvarum
full scientific name: Weissella uvarum Nisiotou et al. 2014
strain designation: B18NM42
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 98.388 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 21986
- name: MRS MEDIUM (DSMZ Medium 11)
- growth: yes
- link: https://mediadive.dsmz.de/medium/11
- composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
culture temp
- @ref: 21986
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 21986
- oxygen tolerance: microaerophile
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.993 |
Isolation, sampling and environmental information
isolation
- @ref: 21986
- sample type: grapes from Vitis vinifera L. 'Agiorgitiko'
- host species: Vitis vinifera
- geographic location: Nemea region
- country: Greece
- origin.country: GRC
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Shrub (Scrub) |
| #Host Body-Site | #Plant | #Fruit (Seed) |
taxonmaps
- @ref: 69479
- File name: preview.99_2998.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_155;96_1045;97_1221;98_1467;99_2998&stattab=map
- Last taxonomy: Weissella
- 16S sequence: KF999666
- Sequence Identity:
- Total samples: 3485
- soil counts: 398
- aquatic counts: 293
- animal counts: 2522
- plant counts: 272
Safety information
risk assessment
- @ref: 21986
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21986
- description: Weissella uvarum strain B18NM42 16S ribosomal RNA gene, partial sequence
- accession: KF999666
- length: 1396
- database: ena
- NCBI tax ID: 1479233
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Weissella uvarum DSM 28060 | GCA_016908785 | contig | ncbi | 1479233 |
| 66792 | Weissella uvarum strain DSM 28060 | 1479233.3 | wgs | patric | 1479233 |
| 66792 | Weissella uvarum DSM 28060 | 2901196568 | draft | img | 1479233 |
| 66792 | Weissella uvarum B18NM42 | GCA_023657405 | contig | ncbi | 1479233 |
GC content
- @ref: 21986
- GC-content: 39.1
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 96.516 | no |
| gram-positive | yes | 96.015 | no |
| anaerobic | no | 93.51 | yes |
| aerobic | no | 94.351 | yes |
| halophile | yes | 94.525 | no |
| spore-forming | no | 96.576 | no |
| thermophile | no | 99.518 | yes |
| glucose-util | yes | 92.348 | no |
| flagellated | no | 98.871 | no |
| glucose-ferment | yes | 87.46 | no |
External links
@ref: 21986
culture collection no.: DSM 28060, NCCB 100484
straininfo link
- @ref: 88917
- straininfo: 405787
literature
- topic: Phylogeny
- Pubmed-ID: 25180092
- title: Weissella uvarum sp. nov., isolated from wine grapes.
- authors: Nisiotou A, Dourou D, Filippousi ME, Banilas G, Tassou C
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.066209-0
- year: 2014
- mesh: Base Composition, DNA, Bacterial/genetics, Electrophoresis, Gel, Pulsed-Field, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Random Amplified Polymorphic DNA Technique, Restriction Mapping, Sequence Analysis, DNA, Spain, Vitis/*microbiology, Weissella/*classification/genetics/isolation & purification, Wine
- topic2: Enzymology
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21986 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28060 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28060) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 88917 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405787.1 |