Strain identifier
BacDive ID: 130358
Type strain: 
Species: Janibacter indicus
Strain Designation: 0704P10-1
Strain history: CGMCC 1.12511 <-- G. Zhang et al.; Third Inst. Oceanogr., State Oceanic Admin., China; 0704P10-1.
NCBI tax ID(s): 857417 (species)
version 8.1 (current version)
General
@ref: 21606
BacDive-ID: 130358
DSM-Number: 29878
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Janibacter indicus 0704P10-1 is a mesophilic bacterium that was isolated from hydrothermal sediment.
NCBI tax id
- NCBI tax id: 857417
- Matching level: species
strain history
| @ref | history |
|---|---|
| 21606 | <- LMG; LMG 27493 <- G. Zhang, Third Inst. Oceanography, State Oceanic Administration, Xiamen, China |
| 67770 | CGMCC 1.12511 <-- G. Zhang et al.; Third Inst. Oceanogr., State Oceanic Admin., China; 0704P10-1. |
doi: 10.13145/bacdive130358.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Intrasporangiaceae
- genus: Janibacter
- species: Janibacter indicus
- full scientific name: Janibacter indicus Zhang et al. 2014
@ref: 21606
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Intrasporangiaceae
genus: Janibacter
species: Janibacter indicus
full scientific name: Janibacter indicus Zhang et al. 2014 emend. Nouioui et al. 2018
strain designation: 0704P10-1
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-8(H4)
Isolation, sampling and environmental information
isolation
| @ref | sample type |
|---|---|
| 21606 | hydrothermal sediment |
| 67770 | Hydrothermal sediment of the Indian Ocean |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Sediment |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_1630.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_927;97_1079;98_1288;99_1630&stattab=map
- Last taxonomy: Janibacter indicus
- 16S sequence: HM222655
- Sequence Identity:
- Total samples: 13107
- soil counts: 4194
- aquatic counts: 1791
- animal counts: 5661
- plant counts: 1461
Safety information
risk assessment
- @ref: 21606
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21606
- description: Janibacter indicus strain 0704P10-1 16S ribosomal RNA gene, partial sequence
- accession: HM222655
- length: 1484
- database: ena
- NCBI tax ID: 857417
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Janibacter indicus strain CGMCC 1.12511 | 857417.3 | wgs | patric | 857417 |
| 66792 | Janibacter indicus CGMCC 1.12511 | 2718217638 | draft | img | 857417 |
| 67770 | Janibacter indicus CGMCC 1.12511 | GCA_900176385 | scaffold | ncbi | 857417 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 21606 | 70 | |
| 67770 | 70 | high performance liquid chromatography (HPLC) |
| 67770 | 71.2 | genome sequence analysis |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 96.472 | no |
| flagellated | no | 98.335 | no |
| gram-positive | yes | 92.384 | no |
| anaerobic | no | 97.992 | no |
| halophile | no | 92.816 | no |
| spore-forming | no | 89.751 | no |
| thermophile | no | 98.689 | yes |
| glucose-util | yes | 87.116 | no |
| aerobic | yes | 92.558 | no |
| glucose-ferment | no | 89.561 | no |
External links
@ref: 21606
culture collection no.: DSM 29878, CGMCC 1.12511, LMG 27493, JCM 30779
straininfo link
- @ref: 88890
- straininfo: 387680
literature
- topic: Phylogeny
- Pubmed-ID: 24744020
- title: Janibacter indicus sp. nov., isolated from hydrothermal sediment of the Indian Ocean.
- authors: Zhang G, Ren H, Wang S, Chen X, Yang Y, Zhang Y, Jiang Y
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.059527-0
- year: 2014
- mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/microbiology, Hydrothermal Vents/*microbiology, Indian Ocean, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 21606 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29878 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29878) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 88890 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID387680.1 |