Strain identifier

BacDive ID: 130354

Type strain: No

Species: Rhodomicrobium vannielii

Strain Designation: BF13

Strain history: <- V. Yurkov, Dept. Microbiol., Univ. Manitoba, Winnipeg, Canada; BF13 <- S. T. Mullineaux

NCBI tax ID(s): 1069 (species)

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General

@ref: 21934

BacDive-ID: 130354

DSM-Number: 23282

keywords: 16S sequence, Bacteria, mesophilic

description: Rhodomicrobium vannielii BF13 is a mesophilic bacterium of the family Hyphomicrobiaceae.

NCBI tax id

  • NCBI tax id: 1069
  • Matching level: species

strain history

  • @ref: 21934
  • history: <- V. Yurkov, Dept. Microbiol., Univ. Manitoba, Winnipeg, Canada; BF13 <- S. T. Mullineaux

doi: 10.13145/bacdive130354.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Hyphomicrobiaceae
  • genus: Rhodomicrobium
  • species: Rhodomicrobium vannielii
  • full scientific name: Rhodomicrobium vannielii Duchow and Douglas 1949 (Approved Lists 1980)

@ref: 21934

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Hyphomicrobiaceae

genus: Rhodomicrobium

species: Rhodomicrobium vannielii

full scientific name: Rhodomicrobium vannielii Duchow and Douglas 1949

strain designation: BF13

type strain: no

Culture and growth conditions

culture medium

  • @ref: 21934
  • name: SUCCINATE MINIMAL SALTS MEDIUM (SMS) (DSMZ Medium 1372)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1372
  • composition: Name: SUCCINATE MINIMAL SALTS MEDIUM (SMS) (DSMZ Medium 1372) Composition: Sodium succinate 2.2 g/l NH4Cl 1.0 g/l K2HPO4 0.9 g/l KH2PO4 0.6 g/l MgSO4 x 7 H2O 0.2 g/l Yeast extract 0.1 g/l CaCl2 x 6 H2O 0.075 g/l EDTA 0.01 g/l Thiamine-HCl x 2 H2O 0.0008 g/l Nicotinic acid 0.0008 g/l FeSO4 x 6 H2O 0.0006 g/l Biotin 0.00016 g/l Vitamin B12 4e-05 g/l ZnSO4 x 7 H2O 1e-05 g/l CoCl2 x 6 H2O 1e-05 g/l MnCl2 x 4 H2O 6e-06 g/l Na2MoO4 x 2 H2O 6e-06 g/l H3BO3 4e-06 g/l NiCl2 x 6 H2O 4e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water

culture temp

  • @ref: 21934
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 21934
  • geographic location: Alberta, Banff National Park, Sulphur Mountain, Upper Middle Springs, West Cave
  • country: Canada
  • origin.country: CAN
  • continent: North America

taxonmaps

  • @ref: 69479
  • File name: preview.99_3623.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_244;96_1880;97_2258;98_2771;99_3623&stattab=map
  • Last taxonomy: Rhodomicrobium
  • 16S sequence: FN668569
  • Sequence Identity:
  • Total samples: 4835
  • soil counts: 2659
  • aquatic counts: 1719
  • animal counts: 222
  • plant counts: 235

Safety information

risk assessment

  • @ref: 21934
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21934
  • description: Rhodomicrobium sp. BF13 partial 16S rRNA gene, strain BF13
  • accession: FN668569
  • length: 1470
  • database: ena
  • NCBI tax ID: 718363

External links

@ref: 21934

culture collection no.: DSM 23282

straininfo link

  • @ref: 88886
  • straininfo: 397506

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21934Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-23282Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23282)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88886Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397506.1