Strain identifier

BacDive ID: 130304

Type strain: No

Species: Klebsiella pneumoniae subsp. pneumoniae

Strain Designation: KlpnKS648, KS648

Strain history: <- K. Sirikanchana, Chulabhorn Research Inst., Bangkok, Thailand; KlpnKS648

NCBI tax ID(s): 72407 (subspecies)

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General

@ref: 21612

BacDive-ID: 130304

DSM-Number: 29417

keywords: 16S sequence, Bacteria

description: Klebsiella pneumoniae subsp. pneumoniae KlpnKS648 is a bacterium that was isolated from hospital effluent.

NCBI tax id

  • NCBI tax id: 72407
  • Matching level: subspecies

strain history

  • @ref: 21612
  • history: <- K. Sirikanchana, Chulabhorn Research Inst., Bangkok, Thailand; KlpnKS648

doi: 10.13145/bacdive130304.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Klebsiella
  • species: Klebsiella pneumoniae subsp. pneumoniae
  • full scientific name: Klebsiella pneumoniae subsp. pneumoniae (Schroeter 1886) Ørskov 1984

@ref: 21612

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Klebsiella

species: Klebsiella pneumoniae subsp. pneumoniae

full scientific name: Klebsiella pneumoniae subsp. pneumoniae (Schroeter 1886) Ørskov 1984

strain designation: KlpnKS648, KS648

type strain: no

Morphology

multimedia

  • @ref: 21612
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_29417.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 21612
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 21612
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan+energy source
6836816199urea+hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine+degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole+

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
21612+-+-+-+-+--+++++++++-

Isolation, sampling and environmental information

isolation

  • @ref: 21612
  • sample type: hospital effluent
  • geographic location: Bangkok
  • country: Thailand
  • origin.country: THA
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Engineered#Waste#Wastewater
#Infection#Medical environment#Clinic

taxonmaps

  • @ref: 69479
  • File name: preview.99_10.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_9;99_10&stattab=map
  • Last taxonomy: Klebsiella pneumoniae
  • 16S sequence: KJ946379
  • Sequence Identity:
  • Total samples: 47492
  • soil counts: 1141
  • aquatic counts: 3887
  • animal counts: 41102
  • plant counts: 1362

Safety information

risk assessment

  • @ref: 21612
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21612
  • description: Klebsiella pneumoniae subsp. pneumoniae strain KS648 16S ribosomal RNA gene, partial sequence
  • accession: KJ946379
  • length: 1356
  • database: nuccore
  • NCBI tax ID: 72407

External links

@ref: 21612

culture collection no.: DSM 29417

straininfo link

  • @ref: 88839
  • straininfo: 396833

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21612Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29417Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29417)
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88839Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396833.1