Strain identifier
BacDive ID: 13030
Type strain: 
Species: Pseudomonas syringae
Strain Designation: 6
Strain history: <- H. Stolp (Pseudomonas lachrymans) <- ATCC <- S.P. Doolittle, 6
NCBI tax ID(s): 317 (species)
version 9 (current version)
General
@ref: 12693
BacDive-ID: 13030
DSM-Number: 50272
keywords: 16S sequence, Bacteria, plant pathogen
description: Pseudomonas syringae 6 is a plant pathogen that was isolated from Cucumis sativus.
NCBI tax id
- NCBI tax id: 317
- Matching level: species
strain history
- @ref: 12693
- history: <- H. Stolp (Pseudomonas lachrymans) <- ATCC <- S.P. Doolittle, 6
doi: 10.13145/bacdive13030.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas syringae
- full scientific name: Pseudomonas syringae van Hall 1902 (Approved Lists 1980)
@ref: 12693
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas syringae
full scientific name: Pseudomonas syringae van Hall 1902
strain designation: 6
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 12693 | REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) | yes | https://mediadive.dsmz.de/medium/1a | Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
| 12693 | REACTIVATION WITH LIQUID MEDIUM 54 (DSMZ Medium 54a) | yes | https://mediadive.dsmz.de/medium/54a | Name: REACTIVATION WITH LIQUID MEDIUM 54 (DSMZ Medium 54a) Composition: Glucose 20.0 g/l CaCO3 20.0 g/l Agar 17.0 g/l (optional) Yeast extract 10.0 g/l Distilled water |
culture temp
- @ref: 12693
- growth: positive
- type: growth
- temperature: 26
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | + | assimilation |
| 68369 | 17128 | adipate | - | assimilation |
| 68369 | 27689 | decanoate | - | assimilation |
| 68369 | 24265 | gluconate | + | assimilation |
| 68369 | 17306 | maltose | - | assimilation |
| 68369 | 59640 | N-acetylglucosamine | - | assimilation |
| 68369 | 16899 | D-mannitol | + | assimilation |
| 68369 | 16024 | D-mannose | - | assimilation |
| 68369 | 30849 | L-arabinose | - | assimilation |
| 68369 | 17634 | D-glucose | + | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | + | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | gelatinase | - | |
| 68369 | beta-glucosidase | + | 3.2.1.21 |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12693 | - | - | - | - | - | + | - | - | + | - | - | + | - | - | + | - | - | + | + | - | +/- |
Isolation, sampling and environmental information
isolation
- @ref: 12693
- sample type: Cucumis sativus
- host species: Cucumis sativus
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Host
- Cat2: #Plants
- Cat3: #Herbaceous plants (Grass,Crops)
Safety information
risk assessment
- @ref: 12693
- pathogenicity plant: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Pseudomonas syringae pv. lachrymans strain ATCC 11965 16S-23S ribosomal RNA intergenic spacer, partial sequence
- accession: HM771302
- length: 546
- database: nuccore
- NCBI tax ID: 53707
External links
@ref: 12693
culture collection no.: DSM 50272, ATCC 11965, DSM 60136
straininfo link
- @ref: 82241
- straininfo: 35457
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 12693 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 50272) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-50272 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 68369 | Automatically annotated from API 20NE | |||||
| 82241 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID35457.1 | StrainInfo: A central database for resolving microbial strain identifiers |