Strain identifier

BacDive ID: 130293

Type strain: No

Species: Enterobacter sp.

Strain Designation: SCF1

Strain history: <- H. Woo, Univ. Tennessee, Knoxville, USA; SCF1 <- Joint BioEnergy Institute, Lawrence Berkely National Laboratory, Emeryville, CA, USA

NCBI tax ID(s): 42895 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9 (current version):
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 9 (current version)

General

@ref: 21583

BacDive-ID: 130293

DSM-Number: 25997

keywords: Bacteria

description: Enterobacter sp. SCF1 is a bacterium that was isolated from forest soil.

NCBI tax id

  • NCBI tax id: 42895
  • Matching level: species

strain history

  • @ref: 21583
  • history: <- H. Woo, Univ. Tennessee, Knoxville, USA; SCF1 <- Joint BioEnergy Institute, Lawrence Berkely National Laboratory, Emeryville, CA, USA

doi: 10.13145/bacdive130293.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Enterobacter
  • species: Enterobacter sp.
  • full scientific name: Enterobacter Hormaeche and Edwards 1960 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Cloaca

@ref: 21583

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Enterobacter

species: Enterobacter sp.

full scientific name: Enterobacter sp.

strain designation: SCF1

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21583R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
21583NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 21583
  • growth: positive
  • type: growth
  • temperature: 28

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole+

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
21583+++++---++-+++++-+++-

Isolation, sampling and environmental information

isolation

  • @ref: 21583
  • sample type: forest soil
  • geographic location: Luquillo, El Yunque experimental forest, Short Cloud forest
  • country: Puerto Rico
  • origin.country: PRI
  • continent: Middle and South America

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil

External links

@ref: 21583

culture collection no.: DSM 25997

straininfo link

  • @ref: 88828
  • straininfo: 397667

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21583Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-25997Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25997)
68368Automatically annotated from API 20E
88828Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397667.1