Strain identifier
BacDive ID: 130288
Type strain: 
Species: Dietzia sp.
Strain Designation: UCD-THP
Strain history: <- D. A. Coil, Health Sciences Drive, Davis,USA; UCD-THP <- A. L. Diep
NCBI tax ID(s): 1871616 (species)
version 9.1 (current version)
General
@ref: 21578
BacDive-ID: 130288
DSM-Number: 46805
keywords: genome sequence, Bacteria, Gram-positive
description: Dietzia sp. UCD-THP is a Gram-positive bacterium that was isolated from residential toilet handle.
NCBI tax id
- NCBI tax id: 1871616
- Matching level: species
strain history
- @ref: 21578
- history: <- D. A. Coil, Health Sciences Drive, Davis,USA; UCD-THP <- A. L. Diep
doi: 10.13145/bacdive130288.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Dietziaceae
- genus: Dietzia
- species: Dietzia sp.
- full scientific name: Dietzia Rainey et al. 1995
@ref: 21578
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Dietziaceae
genus: Dietzia
species: Dietzia sp.
full scientific name: Dietzia sp.
strain designation: UCD-THP
type strain: no
Morphology
cell morphology
- @ref: 69480
- motility: no
- confidence: 91.1
multimedia
- @ref: 21578
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_46805.jpg
- caption: Medium 215 37°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 21578
- name: BHI MEDIUM (DSMZ Medium 215)
- growth: yes
- link: https://mediadive.dsmz.de/medium/215
- composition: Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
culture temp
- @ref: 21578
- growth: positive
- type: growth
- temperature: 37
Isolation, sampling and environmental information
isolation
- @ref: 21578
- sample type: residential toilet handle
- geographic location: Davis
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Engineered
- Cat2: #Industrial
- Cat3: #Engineered product
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Dietzia sp. UCD-THP | GCA_000349585 | scaffold | ncbi | 1292020 |
| 66792 | Dietzia sp. UCD-THP | 1292020.3 | wgs | patric | 1292020 |
| 66792 | Dietzia sp. UCD-THP | 2547132191 | draft | img | 1292020 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 89.886 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.244 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 83.993 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 64.982 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 95.967 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 91.1 | no |
External links
@ref: 21578
culture collection no.: DSM 46805
straininfo link
- @ref: 88823
- straininfo: 399395
literature
- topic: Genetics
- Pubmed-ID: 23661480
- title: Draft Genome Sequence of Dietzia sp. Strain UCD-THP (Phylum Actinobacteria).
- authors: Diep AL, Lang JM, Darling AE, Eisen JA, Coil DA
- journal: Genome Announc
- DOI: 10.1128/genomeA.00197-13
- year: 2013
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21578 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-46805 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46805) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 88823 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399395.1 |