Strain identifier
BacDive ID: 130286
Type strain: 
Species: Desulfovibrio biadhensis
Strain Designation: BD4, KhaledBd4
Strain history: M.-L. Fardeau; IRD-MIO, Aix-Marseille Univ., France; Khaled BD4.
NCBI tax ID(s): 1537568 (species)
version 9 (current version)
General
@ref: 21889
BacDive-ID: 130286
DSM-Number: 28904
keywords: 16S sequence, Bacteria, anaerobe
description: Desulfovibrio biadhensis BD4 is an anaerobe bacterium that was isolated from water of a terrestrial thermal spring.
NCBI tax id
- NCBI tax id: 1537568
- Matching level: species
strain history
| @ref | history |
|---|---|
| 21889 | <- M. L. Fardeau, Lab. Microbiol. de l'IRD/ESIL, Univ. de Provence et de la Méditerranée, Marseille, France; KhaledBd4 <- K. Fadhlaoui {2013} |
| 67770 | M.-L. Fardeau; IRD-MIO, Aix-Marseille Univ., France; Khaled BD4. |
doi: 10.13145/bacdive130286.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfovibrionales
- family: Desulfovibrionaceae
- genus: Desulfovibrio
- species: Desulfovibrio biadhensis
- full scientific name: Desulfovibrio biadhensis Fadhlaoui et al. 2015
@ref: 21889
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfovibrionales
family: Desulfovibrionaceae
genus: Desulfovibrio
species: Desulfovibrio biadhensis
full scientific name: Desulfovibrio biadhensis Fadhlaoui et al. 2015
strain designation: BD4, KhaledBd4
type strain: yes
Morphology
colony morphology
- @ref: 21889
- incubation period: 8-14 days
Culture and growth conditions
culture medium
- @ref: 21889
- name: DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c)
- growth: yes
- link: https://mediadive.dsmz.de/medium/195c
- composition: Name: DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c) Composition: NaCl 20.9372 g/l Na2SO4 2.99103 g/l MgCl2 x 6 H2O 2.99103 g/l Na-L-lactate 2.49252 g/l Na2CO3 1.49551 g/l KCl 0.498504 g/l Na2S x 9 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 21889 | positive | growth | 35 |
| 67770 | positive | growth | 35 |
Physiology and metabolism
oxygen tolerance
- @ref: 21889
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 21889 | water of a terrestrial thermal spring | Siliana, region of El Krib, Hammam Biadha | Tunisia | TUN | Africa | 35.7752 | 9.2668 |
| 67770 | Water of a Tunisian thermal spring |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Thermal spring
Safety information
risk assessment
- @ref: 21889
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21889
- description: Desulfovibrio biadhensis partial 16S rRNA gene, type strain BD4T
- accession: LM999902
- length: 1576
- database: nuccore
- NCBI tax ID: 1537568
GC content
- @ref: 21889
- GC-content: 54.6
- method: high performance liquid chromatography (HPLC)
External links
@ref: 21889
culture collection no.: DSM 28904, JCM 30146
straininfo link
- @ref: 88821
- straininfo: 398129
literature
- topic: Phylogeny
- Pubmed-ID: 25634952
- title: Characterization of Desulfovibrio biadhensis sp. nov., isolated from a thermal spring.
- authors: Fadhlaoui K, Ben Hania W, Postec A, Fauque G, Hamdi M, Ollivier B, Fardeau ML
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000088
- year: 2015
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Desulfovibrio/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Hot Springs/*microbiology, Hydrogensulfite Reductase/chemistry, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tunisia
- topic2: Enzymology
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21889 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28904 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28904) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 88821 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398129.1 |