Archive BacDiveID:10.13145/bacdive130285.20240510.9

Strain identifier

BacDive ID: 130285

Type strain:

Species: Desulfonatronum zhilinae

Strain Designation: AI915-01

Strain history: <- A. Zakharyuk, Inst. Biochem. Physiol. Microorg., RAS, Pushchino, Russia; AI915-01 <- A. Zakharyuk {2008}

NCBI tax ID(s): 1256678 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 21887

BacDive-ID: 130285

DSM-Number: 26338

keywords: 16S sequence, Bacteria, anaerobe

description: Desulfonatronum zhilinae AI915-01 is an anaerobe bacterium that was isolated from soda lake bottom sediments.

NCBI tax id

NCBI tax id: 1256678
Matching level: species

strain history

@ref: 21887
history: <- A. Zakharyuk, Inst. Biochem. Physiol. Microorg., RAS, Pushchino, Russia; AI915-01 <- A. Zakharyuk {2008}

doi: 10.13145/bacdive130285.20240510.9

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Deltaproteobacteria
order: Desulfovibrionales
family: Desulfonatronaceae
genus: Desulfonatronum
species: Desulfonatronum zhilinae
full scientific name: Desulfonatronum zhilinae Zakharyuk et al. 2016

@ref: 21887

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfovibrionales

family: Desulfonatronaceae

genus: Desulfonatronum

species: Desulfonatronum zhilinae

full scientific name: Desulfonatronum zhilinae Zakharyuk et al. 2016

strain designation: AI915-01

type strain: yes

Morphology

colony morphology

@ref: 21887
incubation period: 3-7 days

Culture and growth conditions

culture medium

@ref: 21887
name: DESULFONATRONUM ZHILINAE MEDIUM (DSMZ Medium 1101a)
growth: yes
link: https://mediadive.dsmz.de/medium/1101a
composition: Name: DESULFONATRONUM ZHILINAE MEDIUM (DSMZ Medium 1101a) Composition: NaCl 24.9252 g/l Na2SO4 2.99103 g/l Na-L-lactate 2.19342 g/l NaHCO3 1.84447 g/l Na2CO3 1.19641 g/l Na2S x 9 H2O 0.498504 g/l K2HPO4 0.498504 g/l Yeast extract 0.199402 g/l MgCl2 x 6 H2O 0.0997009 g/l EDTA 0.00498504 g/l FeSO4 x 7 H2O 0.00219342 g/l NaOH 0.000498504 g/l Pyridoxine hydrochloride 0.000299103 g/l CoCl2 x 6 H2O 0.000199402 g/l Thiamine-HCl x 2 H2O 0.000199402 g/l Nicotinic acid 0.000199402 g/l Calcium pantothenate 9.97009e-05 g/l ZnSO4 x 7 H2O 9.97009e-05 g/l Vitamin B12 9.97009e-05 g/l p-Aminobenzoic acid 7.97607e-05 g/l CuCl2 x 2 H2O 2.99103e-05 g/l Na2MoO4 x 2 H2O 2.99103e-05 g/l NiCl2 x 6 H2O 2.99103e-05 g/l MnCl2 x 4 H2O 2.99103e-05 g/l H3BO3 2.99103e-05 g/l D-(+)-biotin 1.99402e-05 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l Distilled water

culture temp

@ref: 21887
growth: positive
type: growth
temperature: 35

Physiology and metabolism

oxygen tolerance

@ref: 21887
oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

@ref: 21887
sample type: soda lake bottom sediments
geographic location: South Buryatia, Alginskoe Lake (53° 37' N, 109° 38' E)
country: Russia
origin.country: RUS
continent: Asia
latitude: 53.6167
longitude: 109.633

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment
#Condition	#Alkaline

taxonmaps

@ref: 69479
File name: preview.99_7546.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_453;96_2133;97_2569;98_3184;99_7546&stattab=map
Last taxonomy: Desulfonatronum
16S sequence: JX984981
Sequence Identity:
Total samples: 75
soil counts: 8
aquatic counts: 59
animal counts: 8

Safety information

risk assessment

@ref: 21887
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 21887
description: Desulfonatronum zhilinae strain Al915-01 16S ribosomal RNA gene, partial sequence
accession: JX984981
length: 1523
database: nuccore
NCBI tax ID: 1256678

GC content

@ref: 21887
GC-content: 58.3
method: thermal denaturation, midpoint method (Tm)

External links

@ref: 21887

culture collection no.: DSM 26338, VKM B-2744

straininfo link

@ref: 88820
straininfo: 401126

literature

topic: Phylogeny
Pubmed-ID: 25841751
title: Desulfonatronum zhilinae sp. nov., a novel haloalkaliphilic sulfate-reducing bacterium from soda Lake Alginskoe, Trans-Baikal Region, Russia.
authors: Zakharyuk AG, Kozyreva LP, Khijniak TV, Namsaraev BB, Shcherbakova VA
journal: Extremophiles
DOI: 10.1007/s00792-015-0747-0
year: 2015
mesh: Deltaproteobacteria/classification/*isolation & purification/metabolism, Lakes/*microbiology, Salt Tolerance, Siberia, Sulfates/metabolism
topic2: Metabolism

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
21887	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-26338	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26338)
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/
88820	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID401126.1