Strain identifier

BacDive ID: 130277

Type strain: Yes

Species: Deinococcus enclensis

Strain Designation: NI0-1023

Strain history: <- S. G. Dastager, National Institute of Oceanography, Mumbai, India; NI0-1023

NCBI tax ID(s): 1049582 (species)

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General

@ref: 21573

BacDive-ID: 130277

DSM-Number: 25127

keywords: genome sequence, 16S sequence, Bacteria

description: Deinococcus enclensis NI0-1023 is a bacterium that was isolated from marine sediment from an intertidal region of mangroves.

NCBI tax id

  • NCBI tax id: 1049582
  • Matching level: species

strain history

  • @ref: 21573
  • history: <- S. G. Dastager, National Institute of Oceanography, Mumbai, India; NI0-1023

doi: 10.13145/bacdive130277.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/deinococcota
  • domain: Bacteria
  • phylum: Deinococcota
  • class: Deinococci
  • order: Deinococcales
  • family: Deinococcaceae
  • genus: Deinococcus
  • species: Deinococcus enclensis
  • full scientific name: Deinococcus enclensis Thorat et al. 2015

@ref: 21573

domain: Bacteria

phylum: Deinococcus-Thermus

class: Deinococci

order: Deinococcales

family: Deinococcaceae

genus: Deinococcus

species: Deinococcus enclensis

full scientific name: Deinococcus enclensis Thorat et al. 2015

strain designation: NI0-1023

type strain: yes

Isolation, sampling and environmental information

isolation

  • @ref: 21573
  • sample type: marine sediment from an intertidal region of mangroves
  • geographic location: Goa Province, Chorao Island (15°32'34''N and 73°55'15''E)
  • country: India
  • origin.country: IND
  • continent: Asia
  • latitude: 15.5428
  • longitude: 73.9208

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Mangrove
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment
#Environmental#Terrestrial#Tidal flat

taxonmaps

  • @ref: 69479
  • File name: preview.99_44435.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_90;96_1228;97_25437;98_32246;99_44435&stattab=map
  • Last taxonomy: Deinococcus enclensis subclade
  • 16S sequence: HQ858011
  • Sequence Identity:
  • Total samples: 20
  • soil counts: 10
  • aquatic counts: 4
  • animal counts: 6

Sequence information

16S sequences

  • @ref: 21573
  • description: Deinococcus enclensis strain NIO-1023 16S ribosomal RNA gene, partial sequence
  • accession: HQ858011
  • length: 1437
  • database: ena
  • NCBI tax ID: 1049582

Genome sequences

  • @ref: 66792
  • description: Deinococcus enclensis DSM 25127
  • accession: 2928325203
  • assembly level: draft
  • database: img
  • NCBI tax ID: 1049582

GC content

  • @ref: 21573
  • GC-content: 67.2
  • method: fluorimetric

External links

@ref: 21573

culture collection no.: DSM 25127, NCIM 5456

literature

  • topic: Phylogeny
  • Pubmed-ID: 25344421
  • title: Deinococcus enclensis sp. nov., isolated from a marine sediment sample.
  • authors: Thorat MN, Mawlankar R, Sonalkar VV, Venkata Ramana V, Joseph N, Shouche YS, Dastager SG
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-014-0311-4
  • year: 2014
  • mesh: Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Deinococcus/*classification/genetics/*isolation & purification, Fatty Acids/analysis, Geologic Sediments/*microbiology, Glycolipids/analysis, India, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Pigments, Biological, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analysis
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21573Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-25127Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25127)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/