Strain identifier
BacDive ID: 130260
Type strain: 
Species: Diaphorobacter aerolatus
Strain Designation: 8604S-37
Strain history: <- KACC <- S.-J. Kim, Agricultural Microbiology Division, National Academy of Agricultural Science, Rural Development Administration, Suwon, et al.
NCBI tax ID(s): 1288495 (species)
version 8.1 (current version)
General
@ref: 21577
BacDive-ID: 130260
DSM-Number: 100045
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Diaphorobacter aerolatus 8604S-37 is a mesophilic, Gram-negative bacterium that was isolated from outdoor air sample.
NCBI tax id
- NCBI tax id: 1288495
- Matching level: species
strain history
- @ref: 21577
- history: <- KACC <- S.-J. Kim, Agricultural Microbiology Division, National Academy of Agricultural Science, Rural Development Administration, Suwon, et al.
doi: 10.13145/bacdive130260.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Diaphorobacter
- species: Diaphorobacter aerolatus
- full scientific name: Diaphorobacter aerolatus Kim et al. 2014
@ref: 21577
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Diaphorobacter
species: Diaphorobacter aerolatus
full scientific name: Diaphorobacter aerolatus Kim et al. 2014
strain designation: 8604S-37
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.999
Culture and growth conditions
culture medium
- @ref: 21577
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 21577
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.987 |
Isolation, sampling and environmental information
isolation
- @ref: 21577
- sample type: outdoor air sample
- geographic location: Suwon region
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Air
- Cat3: #Outdoor Air
Safety information
risk assessment
- @ref: 21577
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21577
- description: Diaphorobacter aerolatus strain 8604S-37 16S ribosomal RNA gene, partial sequence
- accession: KC352658
- length: 1437
- database: ena
- NCBI tax ID: 1288495
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Diaphorobacter aerolatus KACC 16536 | GCA_014489535 | complete | ncbi | 1288495 |
| 66792 | Diaphorobacter aerolatus strain KACC 16536 | 1288495.3 | complete | patric | 1288495 |
| 66792 | Diaphorobacter aerolatus KACC 16536 | 2897417399 | complete | img | 1288495 |
GC content
- @ref: 21577
- GC-content: 65
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 83.447 | no |
| gram-positive | no | 98.775 | no |
| anaerobic | no | 98.008 | no |
| aerobic | yes | 87.17 | no |
| halophile | no | 96.032 | no |
| spore-forming | no | 94.027 | no |
| thermophile | no | 98.983 | yes |
| glucose-util | no | 71.229 | no |
| motile | no | 68.088 | no |
| glucose-ferment | no | 89.535 | no |
External links
@ref: 21577
culture collection no.: DSM 100045, KACC 16536, NBRC 108926
straininfo link
- @ref: 88799
- straininfo: 406641
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24105945 | Diaphorobacter aerolatus sp. nov., isolated from air, and emended description of the genus Diaphorobacter. | Kim SJ, Moon JY, Ahn JH, Weon HY, Hong SB, Seok SJ, Kwon SW | Int J Syst Evol Microbiol | 10.1099/ijs.0.051060-0 | 2013 | *Air Microbiology, Bacterial Typing Techniques, Base Composition, Comamonadaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Ubiquinone/chemistry | Genetics |
| Phylogeny | 25763990 | Diaphorobacter ruginosibacter sp. nov., isolated from soybean root nodule, and emended description of the genus Diaphorobacter. | Wei XL, Han MS, Xia CC, Ding SL, Xu L, Lin YB, Wang L, Wei GH | Arch Microbiol | 10.1007/s00203-015-1102-7 | 2015 | Bacterial Typing Techniques, Base Composition, Comamonadaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/analysis, Phylogeny, Quinones, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA, Sodium Chloride, Soybeans/*microbiology | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21577 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100045 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100045) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 88799 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406641.1 |