Strain identifier
BacDive ID: 130199
Type strain: 
Species: Bacillus badius
Strain Designation: SGD-V-25
Strain history: <- S. G. Dastager, NCIM Resource Center, Pune; SGD-V-25
NCBI tax ID(s): 1455 (species)
version 8.1 (current version)
General
@ref: 21530
BacDive-ID: 130199
DSM-Number: 28241
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, Gram-positive
description: Bacillus badius SGD-V-25 is a spore-forming, Gram-positive bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 1455
- Matching level: species
strain history
- @ref: 21530
- history: <- S. G. Dastager, NCIM Resource Center, Pune; SGD-V-25
doi: 10.13145/bacdive130199.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus badius
- full scientific name: Bacillus badius Batchelor 1919 (Approved Lists 1980)
synonyms
@ref synonym 20215 Pseudobacillus badius 20215 Bacillus encimensis
@ref: 21530
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus encimensis
full scientific name: Bacillus encimensis Dastager et al. 2015
strain designation: SGD-V-25
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | positive | 100 | |
| 69480 | 96.523 | yes |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 21530
- sample type: marine sediment
- geographic location: Gujarat Province, Veraval coast (20° 53' 51.17'' N 70° 22' 53.00'' E)
- country: India
- origin.country: IND
- continent: Asia
- latitude: 20.8975
- longitude: 70.3814
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_4961.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1133;97_1329;98_3709;99_4961&stattab=map
- Last taxonomy: Bacillus badius subclade
- 16S sequence: KF413433
- Sequence Identity:
- Total samples: 2217
- soil counts: 680
- aquatic counts: 379
- animal counts: 1037
- plant counts: 121
Sequence information
16S sequences
- @ref: 21530
- description: Bacillus encimensis strain SGD-V-25 16S ribosomal RNA gene, partial sequence
- accession: KF413433
- length: 1456
- database: ena
- NCBI tax ID: 1455
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bacillus badius DSM 28241 | GCA_002189605 | scaffold | ncbi | 1455 |
| 66792 | Bacillus badius SGD-V-25 | GCA_001630115 | scaffold | ncbi | 1455 |
| 66792 | Bacillus badius SGD-V-25 | GCA_001700275 | contig | ncbi | 1455 |
| 66792 | Bacillus badius strain V-25 | 1455.8 | wgs | patric | 1455 |
| 66792 | Bacillus encimensis strain DSM 28241 | 1414647.9 | wgs | patric | 1455 |
| 66792 | Bacillus encimensis strain SGD-V-25 | 1414647.3 | wgs | patric | 1455 |
GC content
- @ref: 21530
- GC-content: 37.6
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| flagellated | yes | 74.986 | no |
| gram-positive | yes | 90.15 | no |
| anaerobic | no | 97.403 | no |
| aerobic | yes | 87.959 | no |
| halophile | no | 91.23 | no |
| spore-forming | yes | 96.482 | no |
| thermophile | no | 99.057 | no |
| glucose-util | yes | 77.152 | no |
| motile | yes | 89.308 | no |
| glucose-ferment | no | 94.863 | no |
External links
@ref: 21530
culture collection no.: DSM 28241, NCIM 5513
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25678682 | Bacillus encimensis sp. nov. isolated from marine sediment. | Dastager SG, Mawlankar R, Mual P, Verma A, Krishnamurthi S, Joseph N, Shouche YS | Int J Syst Evol Microbiol | 10.1099/ijs.0.000114 | 2015 | Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, India, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 28820124 | Bacillus wudalianchiensis sp. nov., isolated from grass soils of the Wudalianchi scenic area. | Liu B, Liu GH, Sengonca C, Schumann P, Wang JP, Zhu YJ, Zhang HF | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002042 | 2017 | Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, *Grassland, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives | Transcriptome |
| Phylogeny | 28947104 | Examination into the taxonomic position of Bacillus thermotolerans Yang et al., 2013, proposal for its reclassification into a new genus and species Quasibacillus thermotolerans gen. nov., comb. nov. and reclassification of B. encimensis Dastager et al., 2015 as a later heterotypic synonym of B. badius. | Verma A, Pal Y, Khatri I, Ojha AK, Gruber-Vodicka H, Schumann P, Dastager S, Subramanian S, Mayilraj S, Krishnamurthi S | Syst Appl Microbiol | 10.1016/j.syapm.2017.07.010 | 2017 | Bacillus/*classification/*genetics, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21530 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28241 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28241) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |