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Strain identifier

BacDive ID: 130192

Type strain: Yes

Species: Bacillus xiamenensis

Strain Designation: HYC-10

Strain history: <- LMG; LMG 27143 <- Q. Lai, Third Inst. Oceanography, State Oceanic Administration, Xiamen, China

NCBI tax ID(s): 1178537 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 21523

BacDive-ID: 130192

DSM-Number: 29883

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Bacillus xiamenensis HYC-10 is a mesophilic bacterium that was isolated from flathead mullet, intestinal tract .

NCBI tax id

  • NCBI tax id: 1178537
  • Matching level: species

strain history: <- LMG; LMG 27143 <- Q. Lai, Third Inst. Oceanography, State Oceanic Administration, Xiamen, China

doi: 10.13145/bacdive130192.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Bacillus
  • species: Bacillus xiamenensis
  • full scientific name: Bacillus xiamenensis Lai et al. 2014

@ref: 21523

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Bacillus

species: Bacillus xiamenensis

full scientific name: Bacillus xiamenensis Lai et al. 2014

strain designation: HYC-10

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes61.524
6948094.643positive

Culture and growth conditions

culture medium

  • @ref: 21523
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 21523
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: yes
  • confidence: 95.693

halophily

  • @ref: 69480
  • halophily level: halophilic
  • confidence: 94.242

Isolation, sampling and environmental information

isolation

  • @ref: 21523
  • sample type: flathead mullet, intestinal tract (Mugil cephalus)
  • host species: Mugil cephalus
  • geographic location: sea off Xiamen Island
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2
#Host#Fishes
#Host Body-Site#Gastrointestinal tract

taxonmaps

  • @ref: 69479
  • File name: preview.99_885.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_17;97_607;98_698;99_885&stattab=map
  • Last taxonomy: Bacillus
  • 16S sequence: JX680066
  • Sequence Identity:
  • Total samples: 20329
  • soil counts: 7187
  • aquatic counts: 3497
  • animal counts: 6743
  • plant counts: 2902

Safety information

risk assessment

  • @ref: 21523
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21523
  • description: Bacillus xiamenensis strain MCCC 1A00008 16S ribosomal RNA gene, partial sequence
  • accession: JX680066
  • length: 1513
  • database: ena
  • NCBI tax ID: 1178537

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bacillus xiamenensis HYC-10GCA_000300535contigncbi1178537
66792Bacillus xiamenensis HYC-102534681693draftimg1178537

External links

@ref: 21523

culture collection no.: DSM 29883, CGMCC 1.12326, LMG 27143, MCCC 1A00008

straininfo link

@refpassport
20218http://www.straininfo.net/strains/896427
20218http://www.straininfo.net/strains/896426
20218http://www.straininfo.net/strains/872906
20218http://www.straininfo.net/strains/897388

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24158533Bacillus xiamenensis sp. nov., isolated from intestinal tract contents of a flathead mullet (Mugil cephalus).Lai Q, Liu Y, Shao ZAntonie Van Leeuwenhoek10.1007/s10482-013-0057-42013Animals, Bacillus/*classification/genetics/*isolation & purification/metabolism, Bacterial Typing Techniques, China, DNA, Bacterial/genetics/metabolism, Fatty Acids/chemistry/metabolism, Intestines/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Smegmamorpha/*microbiologyMetabolism
Phylogeny25171924Bacillus invictae sp. nov., isolated from a health product.Branquinho R, Sousa C, Osorio H, Meirinhos-Soares L, Lopes J, Carrico JA, Busse HJ, Abdulmawjood A, Klein G, Kampfer P, Pintado ME, Peixe LVInt J Syst Evol Microbiol10.1099/ijs.0.067850-02014Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Drug Contamination, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Portugal, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny26705002Bacillus zhangzhouensis sp. nov. and Bacillus australimaris sp. nov.Liu Y, Lai Q, Du J, Shao ZInt J Syst Evol Microbiol10.1099/ijsem.0.0008562015

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
21523Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29883Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29883)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes