Strain identifier
BacDive ID: 130192
Type strain: 
Species: Bacillus xiamenensis
Strain Designation: HYC-10
Strain history: <- LMG; LMG 27143 <- Q. Lai, Third Inst. Oceanography, State Oceanic Administration, Xiamen, China
NCBI tax ID(s): 1178537 (species)
version 8.1 (current version)
General
@ref: 21523
BacDive-ID: 130192
DSM-Number: 29883
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Bacillus xiamenensis HYC-10 is a mesophilic bacterium that was isolated from flathead mullet, intestinal tract .
NCBI tax id
- NCBI tax id: 1178537
- Matching level: species
strain history
- @ref: 21523
- history: <- LMG; LMG 27143 <- Q. Lai, Third Inst. Oceanography, State Oceanic Administration, Xiamen, China
doi: 10.13145/bacdive130192.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus xiamenensis
- full scientific name: Bacillus xiamenensis Lai et al. 2014
@ref: 21523
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus xiamenensis
full scientific name: Bacillus xiamenensis Lai et al. 2014
strain designation: HYC-10
type strain: yes
Culture and growth conditions
culture medium
- @ref: 21523
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 21523
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 21523
- sample type: flathead mullet, intestinal tract (Mugil cephalus)
- host species: Mugil cephalus
- geographic location: sea off Xiamen Island
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Host | #Fishes |
| #Host Body-Site | #Gastrointestinal tract |
taxonmaps
- @ref: 69479
- File name: preview.99_885.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_17;97_607;98_698;99_885&stattab=map
- Last taxonomy: Bacillus
- 16S sequence: JX680066
- Sequence Identity:
- Total samples: 20329
- soil counts: 7187
- aquatic counts: 3497
- animal counts: 6743
- plant counts: 2902
Safety information
risk assessment
- @ref: 21523
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21523
- description: Bacillus xiamenensis strain MCCC 1A00008 16S ribosomal RNA gene, partial sequence
- accession: JX680066
- length: 1513
- database: ena
- NCBI tax ID: 1178537
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bacillus xiamenensis HYC-10 | GCA_000300535 | contig | ncbi | 1178537 |
| 66792 | Bacillus xiamenensis HYC-10 | 2534681693 | draft | img | 1178537 |
External links
@ref: 21523
culture collection no.: DSM 29883, CGMCC 1.12326, LMG 27143, MCCC 1A00008
straininfo link
- @ref: 88742
- straininfo: 381063
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24158533 | Bacillus xiamenensis sp. nov., isolated from intestinal tract contents of a flathead mullet (Mugil cephalus). | Lai Q, Liu Y, Shao Z | Antonie Van Leeuwenhoek | 10.1007/s10482-013-0057-4 | 2013 | Animals, Bacillus/*classification/genetics/*isolation & purification/metabolism, Bacterial Typing Techniques, China, DNA, Bacterial/genetics/metabolism, Fatty Acids/chemistry/metabolism, Intestines/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Smegmamorpha/*microbiology | Metabolism |
| Phylogeny | 25171924 | Bacillus invictae sp. nov., isolated from a health product. | Branquinho R, Sousa C, Osorio H, Meirinhos-Soares L, Lopes J, Carrico JA, Busse HJ, Abdulmawjood A, Klein G, Kampfer P, Pintado ME, Peixe LV | Int J Syst Evol Microbiol | 10.1099/ijs.0.067850-0 | 2014 | Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Drug Contamination, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Portugal, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 26705002 | Bacillus zhangzhouensis sp. nov. and Bacillus australimaris sp. nov. | Liu Y, Lai Q, Du J, Shao Z | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000856 | 2015 |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21523 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29883 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29883) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 88742 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID381063.1 |