Strain identifier
BacDive ID: 12818
Type strain: 
Species: Pseudomonas cichorii
Strain Designation: 67-1/1
Strain history: <- S. Köhn; 67-1/1
NCBI tax ID(s): 36746 (species)
version 8.1 (current version)
General
@ref: 12689
BacDive-ID: 12818
DSM-Number: 50260
keywords: Bacteria, mesophilic, plant pathogen
description: Pseudomonas cichorii 67-1/1 is a mesophilic plant pathogen that was isolated from Chrysanthemum indicum "Yellow Mandalay", soft rot of stem.
NCBI tax id
- NCBI tax id: 36746
- Matching level: species
strain history
- @ref: 12689
- history: <- S. Köhn; 67-1/1
doi: 10.13145/bacdive12818.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas cichorii
- full scientific name: Pseudomonas cichorii (Swingle 1925) Stapp 1928 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Phytomonas cichorii
@ref: 12689
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas cichorii
full scientific name: Pseudomonas cichorii (Swingle 1925) Stapp 1928
strain designation: 67-1/1
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 12689 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
| 12689 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
| 12689 | GLUCOSE YEAST EXTRACT MEDIUM (DSMZ Medium 54) | yes | https://mediadive.dsmz.de/medium/54 | Name: GLUCOSE YEAST EXTRACT MEDIUM (DSMZ Medium 54) Composition: CaCO3 20.0 g/l Glucose 20.0 g/l Agar 17.0 g/l Yeast extract 10.0 g/l Distilled water |
culture temp
- @ref: 12689
- growth: positive
- type: growth
- temperature: 27
- range: mesophilic
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | + | assimilation |
| 68369 | 17128 | adipate | - | assimilation |
| 68369 | 27689 | decanoate | + | assimilation |
| 68369 | 24265 | gluconate | + | assimilation |
| 68369 | 17306 | maltose | - | assimilation |
| 68369 | 59640 | N-acetylglucosamine | - | assimilation |
| 68369 | 16899 | D-mannitol | + | assimilation |
| 68369 | 16024 | D-mannose | + | assimilation |
| 68369 | 30849 | L-arabinose | + | assimilation |
| 68369 | 17634 | D-glucose | + | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | + | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | cytochrome oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | - | |
| 68369 | beta-glucosidase | + | 3.2.1.21 |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12689 | - | - | - | - | - | + | - | - | + | + | + | + | - | - | + | + | - | + | + | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 12689
- sample type: Chrysanthemum indicum "Yellow Mandalay", soft rot of stem
- host species: Chrysanthemum indicum
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Decomposing plant |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Stem (Branch) |
Safety information
risk assessment
- @ref: 12689
- pathogenicity plant: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
External links
@ref: 12689
culture collection no.: DSM 50260
straininfo link
- @ref: 82028
- straininfo: 3991
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 12689 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 50260) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-50260 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 68369 | Automatically annotated from API 20NE | |||
| 82028 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID3991.1 | StrainInfo: A central database for resolving microbial strain identifiers |