Strain identifier
BacDive ID: 12809
Type strain: 
Species: Pseudomonas asplenii
Strain Designation: PA 17
Strain history: K. Komagata <-- R. Hugh 978 <-- ATCC 10855 <-- B. A. Friedman PA 17.
NCBI tax ID(s): 53407 (species)
General
@ref: 12684
BacDive-ID: 12809
DSM-Number: 50254
keywords: 16S sequence, Bacteria, plant pathogen
description: Pseudomonas asplenii PA 17 is a plant pathogen of the family Pseudomonadaceae.
NCBI tax id
- NCBI tax id: 53407
- Matching level: species
strain history
| @ref | history |
|---|---|
| 12684 | <- H. Stolp <- ATCC <- B.A. Friedman, PA 17 |
| 67770 | K. Komagata <-- R. Hugh 978 <-- ATCC 10855 <-- B. A. Friedman PA 17. |
doi: 10.13145/bacdive12809.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas asplenii
- full scientific name: Pseudomonas asplenii (Ark and Tompkins 1946) Savulescu 1947 (Approved Lists 1980)
synonyms
@ref synonym 20215 Phytomonas asplenii 20215 Pseudomonas fuscovaginae
@ref: 12684
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas asplenii
full scientific name: Pseudomonas asplenii (Ark and Tompkins 1946) Savulescu 1947 emend. Tvrzová et al. 2006
strain designation: PA 17
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 12684 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
| 12684 | GLUCOSE YEAST EXTRACT MEDIUM (DSMZ Medium 54) | yes | https://mediadive.dsmz.de/medium/54 | Name: GLUCOSE YEAST EXTRACT MEDIUM (DSMZ Medium 54) Composition: CaCO3 20.0 g/l Glucose 20.0 g/l Agar 17.0 g/l Yeast extract 10.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 12684 | positive | growth | 27 |
| 67770 | positive | growth | 30 |
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | + | assimilation |
| 68369 | 17128 | adipate | - | assimilation |
| 68369 | 27689 | decanoate | + | assimilation |
| 68369 | 24265 | gluconate | + | assimilation |
| 68369 | 17306 | maltose | - | assimilation |
| 68369 | 59640 | N-acetylglucosamine | - | assimilation |
| 68369 | 16899 | D-mannitol | + | assimilation |
| 68369 | 16024 | D-mannose | + | assimilation |
| 68369 | 30849 | L-arabinose | + | assimilation |
| 68369 | 17634 | D-glucose | + | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | - | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | + | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | gelatinase | - | |
| 68369 | beta-glucosidase | - | 3.2.1.21 |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | + | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12684 | - | - | - | + | - | - | - | - | + | + | + | + | - | - | + | + | - | + | + | - | +/- |
Safety information
risk assessment
- @ref: 12684
- pathogenicity plant: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 67770
- description: Pseudomonas asplenii partial 16S rRNA gene, strain LMG 5147
- accession: HE586387
- length: 1498
- database: nuccore
- NCBI tax ID: 53407
External links
@ref: 12684
culture collection no.: DSM 50254, ATCC 10855, JCM 13885, BCRC 15820, CCUG 32774, CECT 4469, ICMP 3943, LMG 5147, NCCB 69030, NCPPB 959, NRRL B-829
straininfo link
- @ref: 82019
- straininfo: 3933
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 12684 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 50254) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-50254 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 68369 | Automatically annotated from API 20NE | |||
| 82019 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID3933.1 | StrainInfo: A central database for resolving microbial strain identifiers |