Strain identifier
BacDive ID: 128
Type strain: 
Species: Acidithiobacillus albertensis
Strain history: <- ATCC <- E. J. Laishley, Univ. Calgary, Canada <- R. D. Bryant
NCBI tax ID(s): 119978 (species)
version 8.1 (current version)
General
@ref: 5322
BacDive-ID: 128
DSM-Number: 14366
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Acidithiobacillus albertensis DSM 14366 is a mesophilic, Gram-negative bacterium that was isolated from acidic soil at sulfur stockpile.
NCBI tax id
- NCBI tax id: 119978
- Matching level: species
strain history
- @ref: 5322
- history: <- ATCC <- E. J. Laishley, Univ. Calgary, Canada <- R. D. Bryant
doi: 10.13145/bacdive128.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Acidithiobacillia
- order: Acidithiobacillales
- family: Acidithiobacillaceae
- genus: Acidithiobacillus
- species: Acidithiobacillus albertensis
- full scientific name: Acidithiobacillus albertensis corrig. (Bryant et al. 1988) Kelly and Wood 2000
synonyms
@ref synonym 20215 Acidithiobacillus albertis 20215 Thiobacillus albertis
@ref: 5322
domain: Bacteria
phylum: Proteobacteria
class: Acidithiobacillia
order: Acidithiobacillales
family: Acidithiobacillaceae
genus: Acidithiobacillus
species: Acidithiobacillus albertensis
full scientific name: Acidithiobacillus albertensis (Bryant et al. 1988) Kelly and Wood 2000
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.999
Culture and growth conditions
culture medium
- @ref: 5322
- name: ACIDITHIOBACILLUS THIOOXIDANS MEDIUM (DSMZ Medium 71)
- growth: yes
- link: https://mediadive.dsmz.de/medium/71
- composition: Name: ACIDITHIOBACILLUS THIOOXIDANS MEDIUM (DSMZ Medium 71; with strain-specific modifications) Composition: Na2S2O3 x 5 H2O 5.0 g/l KH2PO4 3.0 g/l (NH4)2SO4 3.0 g/l MgSO4 x 7 H2O 0.5 g/l CaCl2 x 2 H2O 0.25 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water
culture temp
- @ref: 5322
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.999 |
Isolation, sampling and environmental information
isolation
- @ref: 5322
- sample type: acidic soil at sulfur stockpile
- geographic location: Alberta, Fox Creek
- country: Canada
- origin.country: CAN
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Condition | #Acidic | |
| #Condition | #Sulfuric |
taxonmaps
- @ref: 69479
- File name: preview.99_922.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_163;96_544;97_628;98_726;99_922&stattab=map
- Last taxonomy: Acidithiobacillus
- 16S sequence: KF537578
- Sequence Identity:
- Total samples: 1758
- soil counts: 228
- aquatic counts: 1330
- animal counts: 187
- plant counts: 13
Safety information
risk assessment
- @ref: 5322
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Acidithiobacillus albertensis culture-collection DSM:14366 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence | KF537578 | 2243 | ena | 119978 |
| 5322 | Acidithiobacillus albertensis 16S rRNA gene, strain DSM 14366 | AJ459804 | 1494 | ena | 119978 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acidithiobacillus albertensis DSM 14366 | GCA_001931655 | scaffold | ncbi | 119978 |
| 66792 | Acidithiobacillus albertensis strain DSM 14366 | 119978.4 | wgs | patric | 119978 |
| 66792 | Acidithiobacillus albertensis DSM 14366 | 2751185777 | draft | img | 119978 |
GC content
- @ref: 5322
- GC-content: 61.5
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 74.177 | no |
| gram-positive | no | 98.097 | no |
| anaerobic | no | 97.429 | no |
| aerobic | no | 59.772 | no |
| halophile | no | 88.254 | no |
| spore-forming | no | 93.736 | no |
| thermophile | no | 94.799 | no |
| glucose-util | yes | 65.571 | no |
| motile | yes | 88.694 | no |
| glucose-ferment | no | 82.36 | no |
External links
@ref: 5322
culture collection no.: DSM 14366, ATCC 35403
straininfo link
- @ref: 69811
- straininfo: 41059
literature
- topic: Genetics
- Pubmed-ID: 29255572
- title: Draft genome sequence of the type strain of the sulfur-oxidizing acidophile, Acidithiobacillus albertensis (DSM 14366).
- authors: Castro M, Moya-Beltran A, Covarrubias PC, Gonzalez M, Cardenas JP, Issotta F, Nunez H, Acuna LG, Encina G, Holmes DS, Johnson DB, Quatrini R
- journal: Stand Genomic Sci
- DOI: 10.1186/s40793-017-0282-y
- year: 2017
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 5322 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14366) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14366 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 69811 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID41059.1 | StrainInfo: A central database for resolving microbial strain identifiers |