Strain identifier

BacDive ID: 128

Type strain: Yes

Species: Acidithiobacillus albertensis

Strain history: <- ATCC <- E. J. Laishley, Univ. Calgary, Canada <- R. D. Bryant

NCBI tax ID(s): 119978 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9 (current version):
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 9 (current version)

General

@ref: 5322

BacDive-ID: 128

DSM-Number: 14366

keywords: genome sequence, 16S sequence, Bacteria, Gram-negative

description: Acidithiobacillus albertensis DSM 14366 is a Gram-negative bacterium that was isolated from acidic soil at sulfur stockpile.

NCBI tax id

  • NCBI tax id: 119978
  • Matching level: species

strain history

  • @ref: 5322
  • history: <- ATCC <- E. J. Laishley, Univ. Calgary, Canada <- R. D. Bryant

doi: 10.13145/bacdive128.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Acidithiobacillia
  • order: Acidithiobacillales
  • family: Acidithiobacillaceae
  • genus: Acidithiobacillus
  • species: Acidithiobacillus albertensis
  • full scientific name: Acidithiobacillus albertensis corrig. (Bryant et al. 1988) Kelly and Wood 2000
  • synonyms

    @refsynonym
    20215Acidithiobacillus albertis
    20215Thiobacillus albertis

@ref: 5322

domain: Bacteria

phylum: Proteobacteria

class: Acidithiobacillia

order: Acidithiobacillales

family: Acidithiobacillaceae

genus: Acidithiobacillus

species: Acidithiobacillus albertensis

full scientific name: Acidithiobacillus albertensis (Bryant et al. 1988) Kelly and Wood 2000

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 98.097

Culture and growth conditions

culture medium

  • @ref: 5322
  • name: ACIDITHIOBACILLUS THIOOXIDANS MEDIUM (DSMZ Medium 71)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/71
  • composition: Name: ACIDITHIOBACILLUS THIOOXIDANS MEDIUM (DSMZ Medium 71; with strain-specific modifications) Composition: Na2S2O3 x 5 H2O 5.0 g/l KH2PO4 3.0 g/l (NH4)2SO4 3.0 g/l MgSO4 x 7 H2O 0.5 g/l CaCl2 x 2 H2O 0.25 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water

culture temp

  • @ref: 5322
  • growth: positive
  • type: growth
  • temperature: 30

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no93.736

Isolation, sampling and environmental information

isolation

  • @ref: 5322
  • sample type: acidic soil at sulfur stockpile
  • geographic location: Alberta, Fox Creek
  • country: Canada
  • origin.country: CAN
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Condition#Acidic
#Condition#Sulfuric

taxonmaps

  • @ref: 69479
  • File name: preview.99_922.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_163;96_544;97_628;98_726;99_922&stattab=map
  • Last taxonomy: Acidithiobacillus
  • 16S sequence: KF537578
  • Sequence Identity:
  • Total samples: 1758
  • soil counts: 228
  • aquatic counts: 1330
  • animal counts: 187
  • plant counts: 13

Safety information

risk assessment

  • @ref: 5322
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Acidithiobacillus albertensis culture-collection DSM:14366 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequenceKF5375782243nuccore119978
5322Acidithiobacillus albertensis 16S rRNA gene, strain DSM 14366AJ4598041494nuccore119978

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acidithiobacillus albertensis DSM 14366GCA_001931655scaffoldncbi119978
66792Acidithiobacillus albertensis strain DSM 14366119978.4wgspatric119978
66792Acidithiobacillus albertensis DSM 143662751185777draftimg119978

GC content

  • @ref: 5322
  • GC-content: 61.5
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno74.177no
gram-positiveno98.097no
anaerobicno97.429no
aerobicno59.772no
halophileno88.254no
spore-formingno93.736no
thermophileno94.799no
glucose-utilyes65.571no
motileyes88.694no
glucose-fermentno82.36no

External links

@ref: 5322

culture collection no.: DSM 14366, ATCC 35403

straininfo link

  • @ref: 69811
  • straininfo: 41059

literature

  • topic: Genetics
  • Pubmed-ID: 29255572
  • title: Draft genome sequence of the type strain of the sulfur-oxidizing acidophile, Acidithiobacillus albertensis (DSM 14366).
  • authors: Castro M, Moya-Beltran A, Covarrubias PC, Gonzalez M, Cardenas JP, Issotta F, Nunez H, Acuna LG, Encina G, Holmes DS, Johnson DB, Quatrini R
  • journal: Stand Genomic Sci
  • DOI: 10.1186/s40793-017-0282-y
  • year: 2017

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5322Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14366)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14366
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
69811Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID41059.1StrainInfo: A central database for resolving microbial strain identifiers