Strain identifier
BacDive ID: 12798
Type strain: 
Species: Pseudomonas aeruginosa
Strain Designation: 9
Strain history: <- IMET; IMET 11393 <- U. Möllmann; 9 <- W. Witte;
NCBI tax ID(s): 287 (species)
version 9.3 (current version)
General
@ref: 12535
BacDive-ID: 12798
DSM-Number: 46349
keywords: genome sequence, Bacteria, mesophilic, human pathogen
description: Pseudomonas aeruginosa 9 is a mesophilic human pathogen that was isolated from human.
NCBI tax id
- NCBI tax id: 287
- Matching level: species
strain history
- @ref: 12535
- history: <- IMET; IMET 11393 <- U. Möllmann; 9 <- W. Witte;
doi: 10.13145/bacdive12798.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas aeruginosa
- full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacterium aeruginosum
@ref: 12535
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas aeruginosa
full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900
strain designation: 9
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 125439 | negative | 99 | |
| 125439 | 90.8 | yes |
Culture and growth conditions
culture medium
| @ref | name | growth | link |
|---|---|---|---|
| 12535 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf |
| 12535 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf |
culture temp
- @ref: 12535
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
spore formation
- @ref: 125439
- spore formation: no
- confidence: 98.9
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | + | assimilation |
| 68369 | 17128 | adipate | + | assimilation |
| 68369 | 27689 | decanoate | + | assimilation |
| 68369 | 24265 | gluconate | + | assimilation |
| 68369 | 17306 | maltose | - | assimilation |
| 68369 | 59640 | N-acetylglucosamine | + | assimilation |
| 68369 | 16899 | D-mannitol | + | assimilation |
| 68369 | 16024 | D-mannose | - | assimilation |
| 68369 | 30849 | L-arabinose | - | assimilation |
| 68369 | 17634 | D-glucose | + | assimilation |
| 68369 | 5291 | gelatin | + | hydrolysis |
| 68369 | 4853 | esculin | - | hydrolysis |
| 68369 | 29016 | arginine | + | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | cytochrome oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | + | |
| 68369 | beta-glucosidase | - | 3.2.1.21 |
| 68369 | arginine dihydrolase | + | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12535 | + | - | - | + | - | - | + | - | + | - | - | + | + | - | + | + | + | + | + | - | + |
| 12535 | - | - | - | + | + | - | + | - | + | - | - | + | + | - | + | + | + | + | + | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 12535
- sample type: human
isolation source categories
- Cat1: #Host
- Cat2: #Human
Safety information
risk assessment
- @ref: 12535
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pseudomonas aeruginosa 9 | GCA_004370895 | contig | ncbi | 287 |
| 66792 | Pseudomonas aeruginosa 9 | GCA_004352555 | contig | ncbi | 287 |
| 66792 | Pseudomonas aeruginosa 9 | 651716714 | draft | img | 287 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence |
|---|---|---|---|---|---|
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 98.9 |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 90.8 |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 99 |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 73.8 |
External links
@ref: 12535
culture collection no.: DSM 46349, IMET 11393
straininfo link
- @ref: 82008
- straininfo: 50821
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 12535 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46349) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-46349 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 68369 | Automatically annotated from API 20NE | |||
| 82008 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50821.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |