Strain identifier

BacDive ID: 1274

Type strain: No

Species: Shouchella oshimensis

Strain Designation: P203

Strain history: <- M.S. Borchert <- I. Graeber, P203

NCBI tax ID(s): 290588 (species)

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General

@ref: 7941

BacDive-ID: 1274

DSM-Number: 19153

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive, motile, rod-shaped

description: Shouchella oshimensis P203 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from sponge .

NCBI tax id

  • NCBI tax id: 290588
  • Matching level: species

strain history

  • @ref: 7941
  • history: <- M.S. Borchert <- I. Graeber, P203

doi: 10.13145/bacdive1274.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Shouchella
  • species: Shouchella oshimensis
  • full scientific name: Shouchella oshimensis (Yumoto et al. 2005) Joshi et al. 2022

  • synonyms

    @refsynonym
    20215Shouchella plakortidis
    20215Shouchella lehensis
    20215Alkalihalobacillus lehensis
    20215Alkalihalobacillus oshimensis
    20215Alkalicoccobacillus plakortidis
    20215Bacillus lehensis
    20215Bacillus plakortidis
    20215Alkalihalobacillus plakortidis
    20215Bacillus oshimensis

@ref: 7941

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Bacillaceae

genus: Shouchella

species: Shouchella oshimensis

full scientific name: Shouchella oshimensis (Yumoto et al. 2005) Joshi et al. 2022

strain designation: P203

type strain: no

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
32239positive2.5 µm0.5 µmrod-shapedyes
69480yes92.824
69480positive100

Culture and growth conditions

culture medium

  • @ref: 7941
  • name: ALKALINE NUTRIENT AGAR (DSMZ Medium 31)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/31
  • composition: Name: ALKALINE NUTRIENT AGAR (DSMZ Medium 31) Composition: Agar 15.0 g/l Na2CO3 anhydrous 5.3 g/l Peptone 5.0 g/l NaHCO3 4.2 g/l Meat extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
7941positivegrowth28mesophilic
32239positivegrowth04-30
32239positiveoptimum17.5psychrophilic

culture pH

@refabilitytypepHPH range
32239positivegrowth6.5-10alkaliphile
32239positiveoptimum8.5

Physiology and metabolism

spore formation

@refspore formationconfidence
32239yes
69481yes100
69480yes99.999

halophily

  • @ref: 32239
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: <12 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3223917057cellobiose+carbon source
3223916947citrate+carbon source
3223928757fructose+carbon source
3223928260galactose+carbon source
322395291gelatin+carbon source
3223917234glucose+carbon source
3223917754glycerol+carbon source
3223917716lactose+carbon source
3223917306maltose+carbon source
3223929864mannitol+carbon source
3223937684mannose+carbon source
3223928053melibiose+carbon source
32239506227N-acetylglucosamine+carbon source
3223933942ribose+carbon source
3223917814salicin+carbon source
3223930911sorbitol+carbon source
3223917992sucrose+carbon source
3223927082trehalose+carbon source
3223917632nitrate+reduction

enzymes

@refvalueactivityec
32239alkaline phosphatase+3.1.3.1
32239catalase+1.11.1.6
32239gelatinase+
32239cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 7941
  • sample type: sponge (Plakortis simplex)
  • geographic location: Norwegian Sea, Sula Ridge
  • country: Norway
  • origin.country: NOR
  • continent: Europe

isolation source categories

  • Cat1: #Host
  • Cat2: #Invertebrates (Other)
  • Cat3: #Porifera (Sponges)

taxonmaps

  • @ref: 69479
  • File name: preview.99_21562.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_3955;97_4866;98_6230;99_21562&stattab=map
  • Last taxonomy: Alkalihalobacillus plakortidis
  • 16S sequence: AJ880003
  • Sequence Identity:
  • Total samples: 11617
  • soil counts: 6049
  • aquatic counts: 890
  • animal counts: 2169
  • plant counts: 2509

Safety information

risk assessment

  • @ref: 7941
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7941
  • description: Bacillus plakortidis partial 16S rRNA gene, type strain P203T
  • accession: AJ880003
  • length: 1433
  • database: ena
  • NCBI tax ID: 444060

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Alkalicoccobacillus plakortidis DSM 19153GCA_001420645scaffoldncbi444060
66792Bacillus plakortidis strain DSM 19153444060.4wgspatric444060
66792Bacillus plakortidis DSM 191532645727886draftimg444060
66792Alkalicoccobacillus plakortidis DSM 19153GCA_023703085contigncbi444060

GC content

  • @ref: 7941
  • GC-content: 41.1

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedyes64.686no
gram-positiveyes88.895yes
anaerobicno99.353no
aerobicyes92.017no
halophileyes93.256no
spore-formingyes94.554yes
thermophileno99.196yes
glucose-utilyes90.207yes
motileyes87.772yes
glucose-fermentno89.143no

External links

@ref: 7941

culture collection no.: DSM 19153, NCIMB 14288

straininfo link

  • @ref: 70928
  • straininfo: 323245

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18048744Bacillus plakortidis sp. nov. and Bacillus murimartini sp. nov., novel alkalitolerant members of rRNA group 6.Borchert MS, Nielsen P, Graeber I, Kaesler I, Szewzyk U, Pape T, Antranikian G, Schafer TInt J Syst Evol Microbiol10.1099/ijs.0.65177-02007Animals, Bacillus/chemistry/*classification/genetics/*isolation & purification, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Germany, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Plakortis/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, TemperatureGenetics
Genetics26847896Draft Genome Sequence of Bacillus plakortidis P203T (DSM 19153), an Alkali- and Salt-Tolerant Marine Bacterium.Wang JP, Liu B, Liu GH, Ge CB, Xiao RF, Zheng XF, Shi HGenome Announc10.1128/genomeA.01690-152016

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
7941Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19153)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19153
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32239Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2848028776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
70928Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID323245.1StrainInfo: A central database for resolving microbial strain identifiers