Strain identifier
BacDive ID: 12726
Type strain: 
Species: Azotobacter beijerinckii
Strain Designation: A 17
Strain history: <- D. Claus, A 17
NCBI tax ID(s): 170623 (species)
version 9.1 (current version)
General
@ref: 167
BacDive-ID: 12726
DSM-Number: 381
keywords: genome sequence, Bacteria, Gram-negative
description: Azotobacter beijerinckii A 17 is a Gram-negative bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 170623
- Matching level: species
strain history
- @ref: 167
- history: <- D. Claus, A 17
doi: 10.13145/bacdive12726.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Azotobacter
- species: Azotobacter beijerinckii
- full scientific name: Azotobacter beijerinckii Lipman 1904 (Approved Lists 1980)
@ref: 167
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Azotobacter
species: Azotobacter beijerinckii
full scientific name: Azotobacter beijerinckii Lipman 1904
strain designation: A 17
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.5
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 167 | AZOTOBACTER MEDIUM (DSMZ Medium 3) | yes | https://mediadive.dsmz.de/medium/3 | Name: AZOTOBACTER MEDIUM (DSMZ Medium 3) Composition: Agar 15.0 g/l CaCO3 5.0 g/l Glucose 5.0 g/l Mannitol 5.0 g/l K2HPO4 0.9 g/l KH2PO4 0.1 g/l MgSO4 x 7 H2O 0.1 g/l CaCl2 x 2 H2O 0.1 g/l FeSO4 x 7 H2O 0.01 g/l Na2MoO4 x 2 H2O 0.005 g/l Distilled water |
| 167 | DIAZOTROPHIC MEDIUM (RBA) (DSMZ Medium 441) | yes | https://mediadive.dsmz.de/medium/441 | Name: DIAZOTROPHIC MEDIUM (RBA) (DSMZ Medium 441) Composition: Agar 14.881 g/l DL-Malate 1.98413 g/l D-Glucose 1.98413 g/l D-Mannitol 1.98413 g/l Na-pyruvate 0.992063 g/l Disodium succinate 0.992063 g/l K2HPO4 0.892857 g/l KH2PO4 0.0992065 g/l NaCl 0.0992065 g/l CaCl2 x 2 H2O 0.0992065 g/l MgSO4 x 7 H2O 0.0992065 g/l Yeast extract 0.0496032 g/l FeSO4 x 7 H2O 0.00992065 g/l MnSO4 x H2O 0.00496032 g/l NaVO3 x H2O 0.00496032 g/l Nicotinic acid 0.00248016 g/l Pyridoxine hydrochloride 0.00248016 g/l Calcium pantothenate 0.00248016 g/l Thiamine-HCl x 2 H2O 0.00248016 g/l H3BO3 0.000892857 g/l CoCl2 x 6 H2O 0.000595238 g/l Riboflavin 0.000496032 g/l ZnSO4 x 7 H2O 0.000297619 g/l MnCl2 x 4 H2O 8.92857e-05 g/l Na2MoO4 x 2 H2O 8.92857e-05 g/l NiCl2 x 6 H2O 5.95238e-05 g/l Vitamin B12 4.96032e-05 g/l CuCl2 x 2 H2O 2.97619e-05 g/l Folic acid 9.92063e-06 g/l Biotin 4.96032e-06 g/l Distilled water |
culture temp
- @ref: 167
- growth: positive
- type: growth
- temperature: 30
Isolation, sampling and environmental information
isolation
- @ref: 167
- sample type: soil
- geographic location: Hannover
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 167
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Azotobacter beijerinckii DSM 381 | GCA_900114395 | scaffold | ncbi | 170623 |
| 66792 | Azotobacter beijerinckii strain DSM 381 | 170623.4 | wgs | patric | 170623 |
| 66792 | Azotobacter beijerinckii DSM 381 | 2597490352 | draft | img | 170623 |
GC content
- @ref: 167
- GC-content: 65.6
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 99.5 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 94.287 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 78.764 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.077 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 97.963 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 58.858 | no |
External links
@ref: 167
culture collection no.: DSM 381
straininfo link
- @ref: 81935
- straininfo: 1071
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 167 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 381) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-381 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 81935 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID1071.1 | StrainInfo: A central database for resolving microbial strain identifiers |