Strain identifier
BacDive ID: 12723
Type strain: 
Species: Azotobacter beijerinckii
Strain Designation: S 16
Strain history: <- D. Claus, S 16
NCBI tax ID(s): 170623 (species)
version 8.1 (current version)
General
@ref: 21
BacDive-ID: 12723
DSM-Number: 282
keywords: genome sequence, Bacteria, mesophilic
description: Azotobacter beijerinckii S 16 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 170623
- Matching level: species
strain history
- @ref: 21
- history: <- D. Claus, S 16
doi: 10.13145/bacdive12723.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Azotobacter
- species: Azotobacter beijerinckii
- full scientific name: Azotobacter beijerinckii Lipman 1904 (Approved Lists 1980)
@ref: 21
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Azotobacter
species: Azotobacter beijerinckii
full scientific name: Azotobacter beijerinckii Lipman 1904
strain designation: S 16
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 21 | DIAZOTROPHIC MEDIUM (RBA) (DSMZ Medium 441) | yes | https://mediadive.dsmz.de/medium/441 | Name: DIAZOTROPHIC MEDIUM (RBA) (DSMZ Medium 441) Composition: Agar 14.881 g/l DL-Malate 1.98413 g/l D-Glucose 1.98413 g/l D-Mannitol 1.98413 g/l Na-pyruvate 0.992063 g/l Disodium succinate 0.992063 g/l K2HPO4 0.892857 g/l KH2PO4 0.0992065 g/l NaCl 0.0992065 g/l CaCl2 x 2 H2O 0.0992065 g/l MgSO4 x 7 H2O 0.0992065 g/l Yeast extract 0.0496032 g/l FeSO4 x 7 H2O 0.00992065 g/l MnSO4 x H2O 0.00496032 g/l NaVO3 x H2O 0.00496032 g/l Nicotinic acid 0.00248016 g/l Pyridoxine hydrochloride 0.00248016 g/l Calcium pantothenate 0.00248016 g/l Thiamine-HCl x 2 H2O 0.00248016 g/l H3BO3 0.000892857 g/l CoCl2 x 6 H2O 0.000595238 g/l Riboflavin 0.000496032 g/l ZnSO4 x 7 H2O 0.000297619 g/l MnCl2 x 4 H2O 8.92857e-05 g/l Na2MoO4 x 2 H2O 8.92857e-05 g/l NiCl2 x 6 H2O 5.95238e-05 g/l Vitamin B12 4.96032e-05 g/l CuCl2 x 2 H2O 2.97619e-05 g/l Folic acid 9.92063e-06 g/l Biotin 4.96032e-06 g/l Distilled water |
| 21 | AZOTOBACTER MEDIUM (DSMZ Medium 3) | yes | https://mediadive.dsmz.de/medium/3 | Name: AZOTOBACTER MEDIUM (DSMZ Medium 3) Composition: Agar 15.0 g/l CaCO3 5.0 g/l Glucose 5.0 g/l Mannitol 5.0 g/l K2HPO4 0.9 g/l KH2PO4 0.1 g/l MgSO4 x 7 H2O 0.1 g/l CaCl2 x 2 H2O 0.1 g/l FeSO4 x 7 H2O 0.01 g/l Na2MoO4 x 2 H2O 0.005 g/l Distilled water |
culture temp
- @ref: 21
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 21 | soil | Göttingen | Germany | DEU | Europe |
| 59091 | Soil |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 21
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Azotobacter beijerinckii DSM 282 | GCA_900112015 | scaffold | ncbi | 170623 |
| 66792 | Azotobacter beijerinckii strain DSM 282 | 170623.5 | wgs | patric | 170623 |
| 66792 | Azotobacter beijerinckii DSM 282 | 2597490353 | draft | img | 170623 |
GC content
- @ref: 21
- GC-content: 66.0
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 66.451 | no |
| flagellated | no | 77.033 | no |
| gram-positive | no | 98.617 | no |
| anaerobic | no | 97.936 | no |
| aerobic | yes | 78.581 | no |
| halophile | no | 89.439 | no |
| spore-forming | no | 94.198 | no |
| glucose-ferment | no | 89.906 | no |
| thermophile | no | 99.4 | yes |
| glucose-util | yes | 87.878 | no |
External links
@ref: 21
culture collection no.: CCUG 51005, DSM 282
straininfo link
- @ref: 81932
- straininfo: 10948
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 21 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 282) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-282 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 59091 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 51005) | https://www.ccug.se/strain?id=51005 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 81932 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID10948.1 | StrainInfo: A central database for resolving microbial strain identifiers |