Strain identifier

BacDive ID: 1263

Type strain: Yes

Species: Bacillus altitudinis

Strain Designation: 41KF2b

Strain history: S. Shivaji 41KF2b.

NCBI tax ID(s): 293387 (species)

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General

@ref: 15847

BacDive-ID: 1263

DSM-Number: 21631

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, thermophilic, Gram-positive, rod-shaped

description: Bacillus altitudinis 41KF2b is a spore-forming, thermophilic, Gram-positive bacterium that was isolated from cryogenic tubes used for collecting air samples from high altitudes .

NCBI tax id

  • NCBI tax id: 293387
  • Matching level: species

strain history

@refhistory
15847<- JCM <- S. Shivaji; 41KF2b
67770S. Shivaji 41KF2b.

doi: 10.13145/bacdive1263.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Bacillus
  • species: Bacillus altitudinis
  • full scientific name: Bacillus altitudinis Shivaji et al. 2006

  • synonyms

    • @ref: 20215
    • synonym: Bacillus invictae

@ref: 15847

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Bacillus

species: Bacillus altitudinis

full scientific name: Bacillus altitudinis Shivaji et al. 2006

strain designation: 41KF2b

type strain: yes

Morphology

cell morphology

  • @ref: 23320
  • gram stain: positive
  • cell shape: rod-shaped

colony morphology

  • @ref: 23320
  • colony size: 2-3 mm
  • colony color: white
  • medium used: nutrient agar

Culture and growth conditions

culture medium

  • @ref: 23320
  • name: Nutrient agar (NA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
23320positivemaximum45thermophilic
23320positiveminimum8psychrophilic
67770positivegrowth25mesophilic

culture pH

@refabilitytypepH
23320positiveminimum5
23320positivemaximum8

Physiology and metabolism

spore formation

  • @ref: 23320
  • type of spore: endospore
  • spore formation: yes

halophily

  • @ref: 23320
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 2 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2332016947citrate-assimilation
2332016634raffinose-carbon source
23320casein-hydrolysis
2332017632nitrate-reduction
2332029864mannitol+builds acid from
2332017108D-arabinose+carbon source
2332017057cellobiose+carbon source
2332063150D-rhamnose+carbon source
2332017924D-sorbitol+carbon source
2332016551D-trehalose+carbon source
2332016813galactitol+carbon source
2332017754glycerol+carbon source
2332015428glycine+carbon source
2332015443inulin+carbon source
2332018019L-lysine+carbon source
2332017266L-sorbose+carbon source
2332016857L-threonine+carbon source
2332017268myo-inositol+carbon source
2332028037N-acetylgalactosamine+carbon source
23320506227N-acetylglucosamine+carbon source
2332046793polyethylene glycol+carbon source
2332015361pyruvate+carbon source
2332028017starch+carbon source
2332047869thioglycolate+carbon source
2332018186tyrosine+degradation
233205291gelatin+hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantresistance conc.is sensitivesensitivity conc.
233206472lincomycinyesyes15 µg
2332028971ampicillinyesyes25 µg
233202637amikacinyesyes30 µg
23320100241ciprofloxacinyesyes30 µg
2332028368novobiocinyesyes30 µg
23320100246norfloxacinyesyes10 µg
2332017334penicillinyesyes10 µg
233203770co-trimoxazoleyesyes25 µg
233202676amoxicillinyesyes30 µg
233203515cefuroximeyesyes30 µg
233206104kanamycinyesyes30 µg
23320100147nalidixic acidyesyes30 µg
2332027902tetracyclineyesyes30 µg
233203493cefoperazoneyesyes75 µg

metabolite production

  • @ref: 23320
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

  • @ref: 23320
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
23320catalase+1.11.1.6
23320lipase-
23320phenylalanine deaminase-4.3.1.5
23320urease-3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
23320cryogenic tubes used for collecting air samples from high altitudes (41km)HyderabadIndiaINDAsia17.472278.58
15847cryogenic tubes used for collecting air samples from high altitudes (24, 28 and 41 km)IndiaINDAsia
67770Cryogenic tubes used for collecting air samples from high altitudes

isolation source categories

Cat1Cat2Cat3
#Engineered#Industrial#Engineered product
#Environmental#Air

taxonmaps

  • @ref: 69479
  • File name: preview.99_885.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_17;97_607;98_698;99_885&stattab=map
  • Last taxonomy: Bacillus
  • 16S sequence: AJ831842
  • Sequence Identity:
  • Total samples: 20329
  • soil counts: 7187
  • aquatic counts: 3497
  • animal counts: 6743
  • plant counts: 2902

Safety information

risk assessment

  • @ref: 15847
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15847
  • description: Bacillus altitudinis partial 16S rRNA gene, type strain 41KF2b
  • accession: AJ831842
  • length: 1506
  • database: ena
  • NCBI tax ID: 1178544

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bacillus altitudinis 41KF2b1178544.5wgspatric1178544
66792Bacillus altitudinis 41KF2b2576861487draftimg1178544
67770Bacillus altitudinis 41KF2bGCA_000691145contigncbi1178544

GC content

@refGC-content
1584743
2332043.00

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes89.5no
gram-positiveyes86.702no
anaerobicno99.139no
aerobicyes89.501no
halophileyes75.049no
spore-formingyes96.123no
flagellatedyes87.365no
thermophileno96.893no
glucose-utilyes89.997no
glucose-fermentno87.57no

External links

@ref: 15847

culture collection no.: DSM 21631, JCM 13350, MTCC 7306, BCRC 17879

straininfo link

  • @ref: 70919
  • straininfo: 297137

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16825614Bacillus aerius sp. nov., Bacillus aerophilus sp. nov., Bacillus stratosphericus sp. nov. and Bacillus altitudinis sp. nov., isolated from cryogenic tubes used for collecting air samples from high altitudes.Shivaji S, Chaturvedi P, Suresh K, Reddy GSN, Dutt CBS, Wainwright M, Narlikar JV, Bhargava PMInt J Syst Evol Microbiol10.1099/ijs.0.64029-02006*Air Microbiology, *Altitude, Anti-Bacterial Agents/pharmacology, Bacillus/chemistry/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Cold Temperature, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis/isolation & purification, Genes, rRNA/genetics, Microbial Sensitivity Tests, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAEnzymology
Phylogeny24158533Bacillus xiamenensis sp. nov., isolated from intestinal tract contents of a flathead mullet (Mugil cephalus).Lai Q, Liu Y, Shao ZAntonie Van Leeuwenhoek10.1007/s10482-013-0057-42013Animals, Bacillus/*classification/genetics/*isolation & purification/metabolism, Bacterial Typing Techniques, China, DNA, Bacterial/genetics/metabolism, Fatty Acids/chemistry/metabolism, Intestines/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Smegmamorpha/*microbiologyMetabolism
Phylogeny25171924Bacillus invictae sp. nov., isolated from a health product.Branquinho R, Sousa C, Osorio H, Meirinhos-Soares L, Lopes J, Carrico JA, Busse HJ, Abdulmawjood A, Klein G, Kampfer P, Pintado ME, Peixe LVInt J Syst Evol Microbiol10.1099/ijs.0.067850-02014Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Drug Contamination, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Portugal, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny25977285Reclassification of Bacillus invictae as a later heterotypic synonym of Bacillus altitudinis.Liu Y, Lai Q, Du J, Shao ZInt J Syst Evol Microbiol10.1099/ijs.0.0003362015Bacillus/*classification, Bacterial Typing Techniques, DNA, Bacterial/genetics, Genes, Bacterial, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome
Phylogeny26297145Identification of strains Bacillus aerophilus MTCC 7304T as Bacillus altitudinis and Bacillus stratosphericus MTCC 7305T as a Proteus sp. and the status of the species Bacillus aeriusShivaji et al. 2006. Request for an Opinion.Liu Y, Ramesh Kumar N, Lai Q, Du J, Dobritsa AP, Samadpour M, Shao ZInt J Syst Evol Microbiol10.1099/ijsem.0.0004082015*Bacillus/classification, DNA, Bacterial/genetics, Fatty Acids/genetics, Molecular Sequence Data, Phenotype, Phylogeny, Proteus, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Phylogeny26705002Bacillus zhangzhouensis sp. nov. and Bacillus australimaris sp. nov.Liu Y, Lai Q, Du J, Shao ZInt J Syst Evol Microbiol10.1099/ijsem.0.0008562015
Phylogeny27339257Identification of "Bacillus cellulasensis" strain NIO-1130(T) as a member of Bacillus altitudinis and emendation of the latter.Liu Y, Lai Q, Shao ZArch Microbiol10.1007/s00203-016-1259-82016Bacillus/*classification/*genetics/isolation & purification, Bacterial Typing Techniques, Base Composition/genetics, DNA Gyrase/*genetics, DNA, Bacterial/genetics, Fatty Acids/analysis, Multilocus Sequence Typing, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/*genetics, Sequence Analysis, DNATranscriptome
Metabolism32435881Biodegradation of Butachlor by Bacillus altitudinis and Identification of Metabolites.Kaur R, Goyal DCurr Microbiol10.1007/s00284-020-02031-12020Acetanilides, *Bacillus/genetics, Biodegradation, Environmental, *Herbicides, RNA, Ribosomal, 16S/genetics, Soil MicrobiologyPhylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15847Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21631)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21631
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23320S. Shivaji, P. Chaturvedi, K. Suresh, G. S. N. Reddy, C. B. S. Dutt, M. Wainwright, J. V. Narlikar, P. M. Bhargava10.1099/ijs.0.64029-0Bacillus aerius sp. nov., Bacillus aerophilus sp. nov., Bacillus stratosphericus sp. nov. and Bacillus altitudinis sp. nov., isolated from cryogenic tubes used for collecting air samples from high altitudesIJSEM 56: 1465-1473 200616825614
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
70919Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID297137.1StrainInfo: A central database for resolving microbial strain identifiers