Strain identifier

BacDive ID: 12575

Type strain: Yes

Species: Cellulosimicrobium cellulans

Strain history: CIP <- 1990, DSM <- NCIB, Nocardia cellulans <- M.E. Brown

NCBI tax ID(s): 1710 (species)

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General

@ref: 11359

BacDive-ID: 12575

DSM-Number: 43879

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive, human pathogen

description: Cellulosimicrobium cellulans DSM 43879 is a facultative anaerobe, mesophilic, Gram-positive human pathogen that was isolated from chalk soil.

NCBI tax id

  • NCBI tax id: 1710
  • Matching level: species

strain history

@refhistory
11359<- IMET <- NCIB <- M.E. Brown
67770DSM 43879 <-- IMET 7404 <-- NCIB 8868 <-- M. E. Brown.
117238CIP <- 1990, DSM <- NCIB, Nocardia cellulans <- M.E. Brown

doi: 10.13145/bacdive12575.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Promicromonosporaceae
  • genus: Cellulosimicrobium
  • species: Cellulosimicrobium cellulans
  • full scientific name: Cellulosimicrobium cellulans (Metcalfe and Brown 1957) Schumann et al. 2001

  • synonyms

    @refsynonym
    20215Brevibacterium lyticum
    20215Cellulomonas cartae
    20215Oerskovia xanthineolytica
    20215Nocardia cellulans
    20215Brevibacterium fermentans
    20215Cellulomonas cellulans
    20215Cellulomonas cartalyticum

@ref: 11359

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Promicromonosporaceae

genus: Cellulosimicrobium

species: Cellulosimicrobium cellulans

full scientific name: Cellulosimicrobium cellulans (Metcalfe and Brown 1957) Schumann et al. 2001

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480positive100
117238rod-shapedno

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
11359GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
38130MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
11359CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium220.pdf
117238CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
117238CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
11359positivegrowth28mesophilic
38130positivegrowth30mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 117238
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose+builds acid from62318
68371turanose+builds acid from32528
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside+builds acid from320061
68371methyl alpha-D-mannoside+builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
117238nitrate+reduction17632
117238nitrite-reduction16301

metabolite production

  • @ref: 117238
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
117238oxidase+
117238catalase+1.11.1.6
117238urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
117238-++--+--+-++-+-+-+--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
117238+--+++--+/-++++------++++++++++/--++---++-+/-++-----+/---

Isolation, sampling and environmental information

isolation

@refsample type
11359chalk soil
58989Chalk soil
67770Chalk soil
117238Environment, Chalk soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_256.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_179;97_195;98_218;99_256&stattab=map
  • Last taxonomy: Cellulosimicrobium
  • 16S sequence: X79455
  • Sequence Identity:
  • Total samples: 5475
  • soil counts: 1873
  • aquatic counts: 417
  • animal counts: 1680
  • plant counts: 1505

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
11359yes, in single casesyes, in single cases1Risk group (German classification)
1172381Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Cellulosimicrobium cellulans strain ATCC 12830 16S small subunit ribosomal RNA gene, partial sequenceAY5013631444ena1710
20218Cellulomonas cellulans DSM 43879 16S rDNAX794551477ena1710
20218C.cellulans 16S rRNA geneX838091452ena1710

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Cellulosimicrobium cellulans strain DSM 438791710.9wgspatric1710
66792Cellulosimicrobium cellulans strain NBRC 155161710.19wgspatric1710
66792Cellulosimicrobium cellulans DSM 438792623620579draftimg1710
67770Cellulosimicrobium cellulans NBRC 15516GCA_006539945contigncbi1710
67770Cellulosimicrobium cellulans DSM 43879GCA_900102445contigncbi1710

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno85no
motileyes70.982no
gram-positiveyes87.626no
anaerobicno98.142no
aerobicyes89.993no
halophileno94.045no
spore-formingno86.048no
thermophileno98.839yes
glucose-utilyes88.582no
flagellatedno91.432no
glucose-fermentno65.122no

External links

@ref: 11359

culture collection no.: DSM 43879, ATCC 12830, DSM 43189, IMET 7404, NCIB 8868, CCUG 50776, CIP 103404, LMG 16221, NCIMB 8868, JCM 9965, BCRC 17274, CECT 4282, CFBP 4267, HAMBI 95, IAM 14866, IFO 15516, KCCM 40761, KCTC 1771, KCTC 3259, KCTC 3411, NBIMCC 1642, NBRC 15516, NCTC 8868, NRRL B-2768, VKM Ac-1412

straininfo link

  • @ref: 81789
  • straininfo: 8218

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15143008Reclassification of Cellulosimicrobium variabile Bakalidou et al. 2002 as Isoptericola variabilis gen. nov., comb. nov.Stackebrandt E, Schumann P, Cui XLInt J Syst Evol Microbiol10.1099/ijs.0.02878-02004Actinomycetales/*classification/genetics/metabolism, Amino Acid Sequence, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Peptidoglycan/chemistry, Phospholipids/chemistry, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Terminology as TopicMetabolism
Phylogeny17037045[Polyphasic evidence for the transfer of Promicromonospora yunnanensis to Cellulosimicrobium cellulans].Zhang JL, Liu ZHWei Sheng Wu Xue Bao2006Actinomycetales/*classification/genetics, Base Composition/genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, Species Specificity
Phylogeny19760124Phenotypic and molecular identification of Cellulosimicrobium cellulans isolated from Antarctic snow.Antony R, Krishnan KP, Thomas S, Abraham WP, Thamban MAntonie Van Leeuwenhoek10.1007/s10482-009-9377-92009Actinomycetales/*classification/genetics/*isolation & purification/physiology, Antarctic Regions, Bacterial Typing Techniques, Carbohydrates/analysis, Carbon/metabolism, Cell Wall/chemistry, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Snow/*microbiologyGenetics
Phylogeny26373417Cellulosimicrobium aquatile sp. nov., isolated from Panagal reservoir, Nalgonda, India.Sultanpuram VR, Mothe T, Chintalapati S, Chintalapati VRAntonie Van Leeuwenhoek10.1007/s10482-015-0588-y2015Actinobacteria/*classification/genetics/*isolation & purification/physiology, Aerobiosis, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, India, Lysine/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analysisGenetics
Metabolism27085593Isolation, identification and diesel-oil biodegradation capacities of indigenous hydrocarbon-degrading strains of Cellulosimicrobium cellulans and Acinetobacter baumannii from tarball at Terengganu beach, Malaysia.Nkem BM, Halimoon N, Yusoff FM, Johari WLW, Zakaria MP, Medipally SR, Kannan NMar Pollut Bull10.1016/j.marpolbul.2016.03.0602016Acinetobacter baumannii/*metabolism, Biodegradation, Environmental, Environmental Microbiology, Hydrocarbons/*metabolism, Malaysia, Petroleum/*metabolism, RNA, Ribosomal, 16S/geneticsPhylogeny
Phylogeny35348452Cellulosimicrobium protaetiae sp. nov., isolated from the gut of the larva of Protaetia brevitarsis seulensis.Le Han H, Nguyen TTH, Li Z, Shin NR, Kim SGInt J Syst Evol Microbiol10.1099/ijsem.0.0052962022Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Fatty Acids/chemistry, Larva/microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11359Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43879)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43879
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38130Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15197
58989Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 50776)https://www.ccug.se/strain?id=50776
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
81789Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID8218.1StrainInfo: A central database for resolving microbial strain identifiers
117238Curators of the CIPCollection of Institut Pasteur (CIP 103404)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103404