Strain identifier

BacDive ID: 12561

Type strain: No

Species: Prevotella histicola

Strain Designation: strain 8400706

Strain history: <- V. Roux; strain 8400706 {2008}

NCBI tax ID(s): 470565 (species)

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General

@ref: 15792

BacDive-ID: 12561

DSM-Number: 21553

keywords: 16S sequence, Bacteria, anaerobe, mesophilic, human pathogen

description: Prevotella histicola strain 8400706 is an anaerobe, mesophilic human pathogen that was isolated from human brain abscess.

NCBI tax id

  • NCBI tax id: 470565
  • Matching level: species

strain history

  • @ref: 15792
  • history: <- V. Roux; strain 8400706 {2008}

doi: 10.13145/bacdive12561.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Prevotellaceae
  • genus: Prevotella
  • species: Prevotella histicola
  • full scientific name: Prevotella histicola Downes et al. 2008

@ref: 15792

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Prevotellaceae

genus: Prevotella

species: Prevotella histicola

full scientific name: Prevotella histicola Downes et al. 2008 emend. Hahnke et al. 2016

strain designation: strain 8400706

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15792COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
15792PYG MEDIUM (MODIFIED) (DSMZ Medium 104)yeshttps://mediadive.dsmz.de/medium/104Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water

culture temp

  • @ref: 15792
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 15792
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose+fermentation
6838016634raffinose+fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase+
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase+3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase+3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate+
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
15792---+++---+++-+--++-+----+--+-

Isolation, sampling and environmental information

isolation

  • @ref: 15792
  • sample type: human brain abscess
  • geographic location: Marseille
  • country: France
  • origin.country: FRA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Organ#Brain
#Host Body-Site#Other#Abscess
#Infection#Patient

taxonmaps

  • @ref: 69479
  • File name: preview.99_3080.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_44;96_87;97_92;98_2367;99_3080&stattab=map
  • Last taxonomy: Prevotella histicola subclade
  • 16S sequence: EU853438
  • Sequence Identity:
  • Total samples: 84211
  • soil counts: 1242
  • aquatic counts: 1647
  • animal counts: 80804
  • plant counts: 518

Safety information

risk assessment

  • @ref: 15792
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15792
  • description: Prevotella sp. 8400706 16S ribosomal RNA gene, partial sequence
  • accession: EU853438
  • length: 1483
  • database: ena
  • NCBI tax ID: 574720

External links

@ref: 15792

culture collection no.: DSM 21553

straininfo link

  • @ref: 81775
  • straininfo: 407914

Reference

@idauthorscataloguedoi/urltitle
15792Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21553)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21553
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
81775Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID407914.1StrainInfo: A central database for resolving microbial strain identifiers