Strain identifier

BacDive ID: 1244

Type strain: Yes

Species: Priestia koreensis

Strain Designation: 7.101

Strain history: CIP <- 2009, KCTC <- C.J. Kim, KRIBB

NCBI tax ID(s): 284581 (species)

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General

@ref: 6458

BacDive-ID: 1244

DSM-Number: 16467

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive, motile, rod-shaped

description: Priestia koreensis 7.101 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from rhizosphere.

NCBI tax id

  • NCBI tax id: 284581
  • Matching level: species

strain history

@refhistory
6458<- C.-J. Kim; BR 030 <- J.-C. Lee
344752009, KCTC
67771<- CJ Kim, KRIBB
120471CIP <- 2009, KCTC <- C.J. Kim, KRIBB

doi: 10.13145/bacdive1244.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Priestia
  • species: Priestia koreensis
  • full scientific name: Priestia koreensis (Lim et al. 2006) Gupta et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Bacillus koreensis

@ref: 6458

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Priestia

species: Priestia koreensis

full scientific name: Priestia koreensis (Lim et al. 2006) Gupta et al. 2020

strain designation: 7.101

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
31506positive1.6-2.8 µm0.8-1.6 µmrod-shapedyes
67771rod-shapedyes
67771positive
120471positiverod-shapedyes

pigmentation

  • @ref: 31506
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6458CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
34475Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
120471CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13
120471CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
6458positivegrowth30
31506positivegrowth15-48
31506positiveoptimum35-40
34475positivegrowth30
67771positivegrowth35-40

culture pH

@refabilitytypepHPH range
31506positivegrowth4.5-9alkaliphile
31506positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
6458aerobe
31506aerobe
67771aerobe
120471obligate aerobe

spore formation

@refspore formationtype of sporeconfidence
31506yes
67771yesspore
69480yes93.877
69481yes100

halophily

@refsaltgrowthtested relationconcentration
31506NaClpositivegrowth0-9 %
31506NaClpositiveoptimum0-3 %

observation

@refobservation
31506aggregates in chains
67771quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3150628757fructose+carbon source
3150617234glucose+carbon source
3150617754glycerol+carbon source
3150617716lactose+carbon source
3150617306maltose+carbon source
3150628053melibiose+carbon source
3150616634raffinose+carbon source
3150633942ribose+carbon source
3150617992sucrose+carbon source
3150627082trehalose+carbon source
315064853esculin+hydrolysis
12047117632nitrate-reduction
12047116301nitrite-reduction

metabolite production

  • @ref: 120471
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
31506catalase+1.11.1.6
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase-3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
120471oxidase-
120471catalase+1.11.1.6
120471urease+3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120471--++------++-+-++---

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
6458rhizosphereRepublic of KoreaKORAsia
67771From soilRepublic of KoreaKORAsia
120471Environment, Roots of a willow tree, more than 3 m tall, growing on hillside silt soilRepublic of KoreaKORAsiaDaejeon area

isolation source categories

  • Cat1: #Host Body-Site
  • Cat2: #Plant
  • Cat3: #Rhizosphere

taxonmaps

  • @ref: 69479
  • File name: preview.99_6293.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_2995;97_3682;98_4662;99_6293&stattab=map
  • Last taxonomy: Bacillaceae
  • 16S sequence: AY667496
  • Sequence Identity:
  • Total samples: 21471
  • soil counts: 12200
  • aquatic counts: 3255
  • animal counts: 3427
  • plant counts: 2589

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
64581Risk group (German classification)
1204711Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
6458Bacillus koreensis strain BR030 16S ribosomal RNA gene, partial sequenceAY6674961370nuccore284581
124043Bacillus koreensis 16S ribosomal RNA gene, partial sequence.FJ8896141517nuccore284581

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bacillus koreensis strain DSM 16467284581.3wgspatric284581
66792Bacillus koreensis DSM 164672648501744draftimg284581
67771Priestia koreensis DSM 16467GCA_001274935contigncbi284581

GC content

@refGC-content
645836
6777136.0

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesyes100no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes78.714no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no97.038yes
69480spore-formingspore-formingAbility to form endo- or exosporesyes93.877yes
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes74.992yes
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno89.577no
69480flagellatedmotile2+Ability to perform flagellated movementyes83.689no

External links

@ref: 6458

culture collection no.: DSM 16467, KCTC 3914, BR 030, CIP 110015

straininfo link

  • @ref: 70900
  • straininfo: 232134

literature

  • topic: Phylogeny
  • Pubmed-ID: 16403867
  • title: Bacillus koreensis sp. nov., a spore-forming bacterium, isolated from the rhizosphere of willow roots in Korea.
  • authors: Lim JM, Jeon CO, Lee JC, Ju YJ, Park DJ, Kim CJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.63701-0
  • year: 2006
  • mesh: Bacillus/chemistry/*classification/isolation & purification/physiology, Base Composition, Diaminopimelic Acid, Fatty Acids, Korea, Molecular Sequence Data, Peptidoglycan/chemistry, Phospholipids, Plant Roots/microbiology, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Salix/*microbiology, *Soil Microbiology, Species Specificity
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
6458Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16467)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16467
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31506Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2780428776041
34475Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7826
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
70900Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID232134.1StrainInfo: A central database for resolving microbial strain identifiers
120471Curators of the CIPCollection of Institut Pasteur (CIP 110015)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110015
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy