Strain identifier
BacDive ID: 1238
Type strain: 
Species: Mesobacillus boroniphilus
Strain Designation: T-15z
Strain history: IAM 15287 <-- I. Ahmed T-15Z.
NCBI tax ID(s): 1294265 (strain), 308892 (species)
version 8.1 (current version)
General
@ref: 6844
BacDive-ID: 1238
DSM-Number: 17376
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Mesobacillus boroniphilus T-15z is a mesophilic bacterium that was isolated from soil.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1294265 | strain |
| 308892 | species |
strain history
| @ref | history |
|---|---|
| 6844 | <- I. Ahmed; T-15z |
| 67770 | IAM 15287 <-- I. Ahmed T-15Z. |
doi: 10.13145/bacdive1238.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Mesobacillus
- species: Mesobacillus boroniphilus
- full scientific name: Mesobacillus boroniphilus (Ahmed et al. 2007) Patel and Gupta 2020
synonyms
- @ref: 20215
- synonym: Bacillus boroniphilus
@ref: 6844
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Mesobacillus
species: Mesobacillus boroniphilus
full scientific name: Mesobacillus boroniphilus (Ahmed et al. 2007) Patel and Gupta 2020
strain designation: T-15z
type strain: yes
Culture and growth conditions
culture medium
- @ref: 6844
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220; with strain-specific modifications) Composition: NaCl 25.0 g/l Agar 15.0 g/l Casein peptone 15.0 g/l Soy peptone 5.0 g/l H3BO3 3.092 g/l MnSO4 Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 6844 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 6844 | soil | Kutahya Province,Hisarcik Area | Turkey | TUR | Asia |
| 67770 | Naturally boron containing soil of Hisarcik area in the Kutahya Province | Turkey | TUR | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_2877.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_292;97_834;98_2226;99_2877&stattab=map
- Last taxonomy: Mesobacillus
- 16S sequence: AB198719
- Sequence Identity:
- Total samples: 2499
- soil counts: 1008
- aquatic counts: 793
- animal counts: 580
- plant counts: 118
Safety information
risk assessment
- @ref: 6844
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 6844
- description: Bacillus boroniphilus gene for 16S rRNA, partial sequence, strain: T-15Z
- accession: AB198719
- length: 1500
- database: ena
- NCBI tax ID: 308892
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bacillus boroniphilus JCM 21738 | 1294265.5 | wgs | patric | 1294265 |
| 66792 | Bacillus boroniphilus JCM 21738 | 1294265.3 | wgs | patric | 1294265 |
| 66792 | Bacillus boroniphilus JCM 21738 | 2609459902 | draft | img | 1294265 |
| 67770 | Bacillus sp. 17376 | GCA_000498695 | scaffold | ncbi | 977905 |
| 67770 | Mesobacillus boroniphilus JCM 21738 | GCA_000517385 | contig | ncbi | 1294265 |
| 67770 | Mesobacillus boroniphilus JCM 21738 | GCA_001315165 | contig | ncbi | 1294265 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 6844 | 42.20 | |
| 67770 | 42.2 | high performance liquid chromatography (HPLC) |
| 67770 | 41.35 | genome sequence analysis |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 88.441 | no |
| gram-positive | yes | 86.988 | no |
| anaerobic | no | 98.491 | no |
| aerobic | yes | 84.653 | no |
| halophile | yes | 52.031 | no |
| spore-forming | yes | 95.491 | no |
| thermophile | no | 97.145 | no |
| glucose-util | yes | 88.635 | no |
| flagellated | yes | 78.93 | no |
| glucose-ferment | no | 94.096 | no |
External links
@ref: 6844
culture collection no.: DSM 17376, ATCC BAA 1204, IAM 15287, JCM 21738
straininfo link
- @ref: 70894
- straininfo: 308603
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 17072687 | A novel highly boron tolerant bacterium, Bacillus boroniphilus sp. nov., isolated from soil, that requires boron for its growth. | Ahmed I, Yokota A, Fujiwara T | Extremophiles | 10.1007/s00792-006-0027-0 | 2006 | *Bacillus/genetics/growth & development/isolation & purification/metabolism/ultrastructure, Base Composition/genetics, Boron/metabolism/*pharmacology, Diaminopimelic Acid/metabolism, Drug Resistance, Bacterial/*physiology, Electron Transport/physiology, Escherichia coli Proteins/genetics, Intramolecular Transferases/genetics, Microscopy, Electron, Scanning, Peptidoglycan/metabolism, *Phylogeny, RNA, Bacterial/genetics, Soil Microbiology, Soil Pollutants/metabolism/*pharmacology, Turkey | Metabolism |
| Pathogenicity | 21279440 | In vivo evolutionary engineering of a boron-resistant bacterium: Bacillus boroniphilus. | Sen M, Yilmaz U, Baysal A, Akman S, Cakar ZP | Antonie Van Leeuwenhoek | 10.1007/s10482-011-9557-2 | 2011 | Bacillus/*drug effects/genetics/metabolism, Biological Evolution, Boron/*pharmacology, *Drug Resistance, Bacterial, Genetic Engineering, Stress, Physiological/drug effects | Biotechnology |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 6844 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17376) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17376 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 70894 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID308603.1 | StrainInfo: A central database for resolving microbial strain identifiers |