Strain identifier
BacDive ID: 1213
Type strain:
Species: Neobacillus drentensis
Strain Designation: IDA 1937, R-16337
Strain history: CIP <- 2005, DSMZ <- J. Heyrman: strain R-16337 <- A. Felske: strain IDA 1937
NCBI tax ID(s): 1314752 (strain), 220684 (species)
General
@ref: 5900
BacDive-ID: 1213
DSM-Number: 15600
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, spore-forming, Gram-positive, colony-forming, pigmented
description: Neobacillus drentensis IDA 1937 is a facultative anaerobe, spore-forming, Gram-positive bacterium that forms circular colonies and has a brown pigmentation.
NCBI tax id
NCBI tax id | Matching level |
---|---|
220684 | species |
1314752 | strain |
strain history
@ref | history |
---|---|
5900 | <- J. Heyrman; R-16337 <- A. Felske; IDA 1937 |
67770 | IAM 15256 <-- LMG 21831 <-- J. Heyrman <-- A. Felske. |
118971 | CIP <- 2005, DSMZ <- J. Heyrman: strain R-16337 <- A. Felske: strain IDA 1937 |
doi: 10.13145/bacdive1213.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Neobacillus
- species: Neobacillus drentensis
- full scientific name: Neobacillus drentensis (Heyrman et al. 2004) Patel and Gupta 2020
synonyms
- @ref: 20215
- synonym: Bacillus drentensis
@ref: 5900
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Neobacillus
species: Neobacillus drentensis
full scientific name: Neobacillus drentensis (Heyrman et al. 2004) Patel and Gupta 2020
strain designation: IDA 1937, R-16337
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell shape | motility |
---|---|---|---|---|
23312 | positive | |||
23312 | variable | 0.6-1.2 µm | pleomorphic-shaped | yes |
118971 | positive | rod-shaped | no |
colony morphology
@ref | colony color | colony shape |
---|---|---|
23312 | cream | circular |
118971 |
pigmentation
- @ref: 23312
- production: yes
- color: brown
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
5900 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
38318 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
118971 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 | |
118971 | CIP Medium 328 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=328 |
culture temp
@ref | growth | type | temperature |
---|---|---|---|
5900 | positive | growth | 30 |
23312 | positive | maximum | 50-55 |
23312 | positive | optimum | 30 |
38318 | positive | growth | 30 |
67770 | positive | growth | 28 |
118971 | positive | growth | 10-37 |
118971 | no | growth | 45 |
118971 | no | growth | 55 |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
23312 | positive | minimum | 5.5-6.0 | |
23312 | positive | optimum | 7.0-8.0 | |
23312 | positive | maximum | 9.5-10.0 | alkaliphile |
118971 | positive | growth | 6 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
23312 | facultative anaerobe |
118971 | facultative anaerobe |
spore formation
@ref | spore description | type of spore | spore formation | confidence |
---|---|---|---|---|
23312 | spherical, ellipsoidal, paracentral, subterminal, in swollen sporangia | endospore | yes | |
118971 | yes | |||
69480 | yes | 94.2 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
118971 | NaCl | positive | growth | 0-2 % |
118971 | NaCl | no | growth | 4 % |
118971 | NaCl | no | growth | 6 % |
118971 | NaCl | no | growth | 8 % |
118971 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
23312 | 16947 | citrate | - | assimilation |
23312 | 16808 | 2-dehydro-D-gluconate | - | builds acid from |
23312 | 17426 | 5-dehydro-D-gluconate | - | builds acid from |
23312 | 27613 | amygdalin | - | builds acid from |
23312 | 18305 | arbutin | - | builds acid from |
23312 | 15963 | ribitol | - | builds acid from |
23312 | 17108 | D-arabinose | - | builds acid from |
23312 | 18333 | D-arabitol | - | builds acid from |
23312 | 17057 | cellobiose | - | builds acid from |
23312 | 28847 | D-fucose | - | builds acid from |
23312 | 12936 | D-galactose | - | builds acid from |
23312 | 62318 | D-lyxose | - | builds acid from |
23312 | 16899 | D-mannitol | - | builds acid from |
23312 | 17924 | D-sorbitol | - | builds acid from |
23312 | 16443 | D-tagatose | - | builds acid from |
23312 | 16551 | D-trehalose | - | builds acid from |
23312 | 65327 | D-xylose | - | builds acid from |
23312 | 16813 | galactitol | - | builds acid from |
23312 | 17113 | erythritol | - | builds acid from |
23312 | 28066 | gentiobiose | - | builds acid from |
23312 | 24265 | gluconate | - | builds acid from |
23312 | 17754 | glycerol | - | builds acid from |
23312 | 28087 | glycogen | - | builds acid from |
23312 | 17268 | myo-inositol | - | builds acid from |
23312 | 30849 | L-arabinose | - | builds acid from |
23312 | 18403 | L-arabitol | - | builds acid from |
23312 | 18287 | L-fucose | - | builds acid from |
23312 | 62345 | L-rhamnose | - | builds acid from |
23312 | 17266 | L-sorbose | - | builds acid from |
23312 | 65328 | L-xylose | - | builds acid from |
23312 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
23312 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
23312 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
23312 | 17151 | xylitol | - | builds acid from |
23312 | casein | - | hydrolysis | |
23312 | 5291 | gelatin | - | hydrolysis |
23312 | 15824 | D-fructose | + | builds acid from |
23312 | 17716 | lactose | + | builds acid from |
23312 | 17306 | maltose | + | builds acid from |
23312 | 16024 | D-mannose | + | builds acid from |
23312 | 6731 | melezitose | + | builds acid from |
23312 | 28053 | melibiose | + | builds acid from |
23312 | 17992 | sucrose | + | builds acid from |
23312 | 15443 | inulin | + | builds acid from |
23312 | 506227 | N-acetylglucosamine | + | builds acid from |
23312 | 17814 | salicin | + | builds acid from |
23312 | 4853 | esculin | + | hydrolysis |
23312 | 17634 | D-glucose | +/- | builds acid from |
23312 | 16634 | raffinose | +/- | builds acid from |
23312 | 16988 | D-ribose | +/- | builds acid from |
23312 | 32528 | turanose | +/- | builds acid from |
23312 | 28017 | starch | +/- | builds acid from |
23312 | 17632 | nitrate | +/- | reduction |
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | 24265 | gluconate | - | builds acid from |
68371 | 18403 | L-arabitol | - | builds acid from |
68371 | 18333 | D-arabitol | - | builds acid from |
68371 | 18287 | L-fucose | - | builds acid from |
68371 | 28847 | D-fucose | - | builds acid from |
68371 | 16443 | D-tagatose | - | builds acid from |
68371 | 62318 | D-lyxose | - | builds acid from |
68371 | 28066 | gentiobiose | - | builds acid from |
68371 | 17151 | xylitol | - | builds acid from |
68371 | 28087 | glycogen | - | builds acid from |
68371 | 6731 | melezitose | + | builds acid from |
68371 | 28053 | melibiose | + | builds acid from |
68371 | 17716 | lactose | + | builds acid from |
68371 | 17306 | maltose | + | builds acid from |
68371 | 17057 | cellobiose | - | builds acid from |
68371 | 27613 | amygdalin | - | builds acid from |
68371 | 59640 | N-acetylglucosamine | + | builds acid from |
68371 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
68371 | 17924 | D-sorbitol | - | builds acid from |
68371 | 16899 | D-mannitol | - | builds acid from |
68371 | 17268 | myo-inositol | - | builds acid from |
68371 | 16813 | galactitol | - | builds acid from |
68371 | 62345 | L-rhamnose | - | builds acid from |
68371 | 17266 | L-sorbose | - | builds acid from |
68371 | 15824 | D-fructose | + | builds acid from |
68371 | 17634 | D-glucose | + | builds acid from |
68371 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
68371 | 15963 | ribitol | - | builds acid from |
68371 | 65328 | L-xylose | - | builds acid from |
68371 | 65327 | D-xylose | - | builds acid from |
68371 | 30849 | L-arabinose | - | builds acid from |
68371 | 17108 | D-arabinose | - | builds acid from |
68371 | 17113 | erythritol | - | builds acid from |
68371 | 17754 | glycerol | - | builds acid from |
118971 | 16947 | citrate | - | carbon source |
118971 | 4853 | esculin | + | hydrolysis |
118971 | 606565 | hippurate | + | hydrolysis |
118971 | 17632 | nitrate | + | reduction |
118971 | 16301 | nitrite | + | reduction |
118971 | 17632 | nitrate | + | respiration |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
23312 | 35581 | indole | no |
23312 | 16136 | hydrogen sulfide | no |
118971 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
118971 | 15688 | acetoin | - | |
118971 | 17234 | glucose | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
23312 | arginine dihydrolase | - | 3.5.3.6 |
23312 | beta-galactosidase | + | 3.2.1.23 |
23312 | lysine decarboxylase | - | 4.1.1.18 |
23312 | tryptophan deaminase | - | 4.1.99.1 |
23312 | urease | - | 3.5.1.5 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucuronidase | + | 3.2.1.31 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | alpha-galactosidase | + | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
118971 | oxidase | + | |
118971 | beta-galactosidase | + | 3.2.1.23 |
118971 | alcohol dehydrogenase | - | 1.1.1.1 |
118971 | gelatinase | - | |
118971 | amylase | + | |
118971 | DNase | - | |
118971 | caseinase | - | 3.4.21.50 |
118971 | catalase | + | 1.11.1.6 |
118971 | tween esterase | - | |
118971 | gamma-glutamyltransferase | + | 2.3.2.2 |
118971 | lecithinase | - | |
118971 | lipase | - | |
118971 | lysine decarboxylase | - | 4.1.1.18 |
118971 | ornithine decarboxylase | - | 4.1.1.17 |
118971 | urease | + | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
118971 | - | + | + | + | - | + | - | - | - | - | + | + | + | + | + | - | + | - | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
118971 | - | - | - | - | +/- | - | - | - | - | +/- | + | + | +/- | - | - | - | - | - | - | - | +/- | + | - | +/- | +/- | +/- | - | + | + | + | +/- | +/- | +/- | + | +/- | +/- | - | - | - | +/- | - | - | - | - | - | - | - | +/- | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
118971 | + | + | - | - | - | - | + | - | - | + | + | + | - | + | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
---|---|---|---|---|---|---|---|
23312 | soil, Drentse A agricultural research area | Anlooer Diepje brook | Netherlands | NLD | Europe | 53.0333 | 6.68333 |
5900 | soil | near Anloo | Netherlands | NLD | Europe | ||
67770 | Soil in the Drentse A agricultural research area along the Anlooër Diepje brook | Netherlands | NLD | Europe | |||
118971 | Environment, Soil | Netherlands | NLD | Europe |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Agriculture | |
#Environmental | #Terrestrial | #Soil |
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
5900 | 1 | Risk group (German classification) |
118971 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | UNVERIFIED_ORG: Bacillus drentensis strain LMG 21831 clone XMYP2 16S ribosomal RNA gene, partial sequence | JX009138 | 1469 | nuccore | 220684 |
20218 | Bacillus drentensis gene for 16S rRNA, partial sequence, strain: NBRC 102427 | AB681783 | 1411 | nuccore | 220684 |
23312 | Bacillus drentensis partial 16S rRNA gene, strain LMG 21831 | AJ542506 | 1438 | nuccore | 220684 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Bacillus drentensis NBRC 102427 | 1314752.3 | wgs | patric | 1314752 |
66792 | Bacillus drentensis NBRC 102427 | 2731957651 | draft | img | 1314752 |
67770 | Neobacillus drentensis NBRC 102427 | GCA_001591445 | contig | ncbi | 1314752 |
GC content
@ref | GC-content | method |
---|---|---|
23312 | 39.4 | high performance liquid chromatography (HPLC) |
67770 | 40.2 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
@ref | trait | model | description | prediction | confidence | training_data |
---|---|---|---|---|---|---|
69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 70.097 | no |
69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 89.421 | yes |
69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 94.2 | no |
69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 54.418 | no |
69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 88.882 | yes |
69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 62.064 | no |
External links
@ref: 5900
culture collection no.: DSM 15600, CIP 108808, LMG 21831, JCM 21707, IAM 15256, NBRC 102427
straininfo link
- @ref: 70869
- straininfo: 85436
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 14742458 | Bacillus novalis sp. nov., Bacillus vireti sp. nov., Bacillus soli sp. nov., Bacillus bataviensis sp. nov. and Bacillus drentensis sp. nov., from the Drentse A grasslands. | Heyrman J, Vanparys B, Logan NA, Balcaen A, Rodriguez-Diaz M, Felske A, De Vos P | Int J Syst Evol Microbiol | 10.1099/ijs.0.02723-0 | 2004 | Bacillus/*classification/genetics/isolation & purification, Climate, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Germany, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Poaceae, Polymerase Chain Reaction, RNA, Ribosomal, 16S/genetics, *Soil Microbiology | Genetics |
Phylogeny | 22021583 | Bacillus eiseniae sp. nov., a swarming, moderately halotolerant bacterium isolated from the intestinal tract of an earthworm (Eisenia fetida L.). | Hong SW, Park JM, Kim SJ, Chung KS | Int J Syst Evol Microbiol | 10.1099/ijs.0.034892-0 | 2011 | Animals, Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Intestines/microbiology, Molecular Sequence Data, Oligochaeta/*microbiology, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/analysis | Genetics |
Phylogeny | 22611202 | Bacillus ginsengisoli sp. nov., isolated from soil of a ginseng field. | Nguyen NL, Kim YJ, Hoang VA, Min JW, Liang ZQ, Yang DC | Int J Syst Evol Microbiol | 10.1099/ijs.0.031740-0 | 2012 | Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Panax/*microbiology, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology | Genetics |
Phylogeny | 23314911 | Bacillus abyssalis sp. nov., isolated from a sediment of the South China Sea. | You ZQ, Li J, Qin S, Tian XP, Wang FZ, Zhang S, Li WJ | Antonie Van Leeuwenhoek | 10.1007/s10482-013-9875-7 | 2013 | Bacillus/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid, Fatty Acids/analysis, Geologic Sediments/*microbiology, Hydrogen-Ion Concentration, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Vitamin K 2/analysis | Genetics |
Phylogeny | 23396718 | Bacillus thermocopriae sp. nov., isolated from a compost. | Han L, Yang G, Zhou X, Yang D, Hu P, Lu Q, Zhou S | Int J Syst Evol Microbiol | 10.1099/ijs.0.046953-0 | 2013 | Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/analysis | Genetics |
Phylogeny | 25013229 | Bacillus mesonae sp. nov., isolated from the root of Mesona chinensis. | Liu B, Liu GH, Hu GH, Chen MC | Int J Syst Evol Microbiol | 10.1099/ijs.0.059485-0 | 2014 | Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Genotype, Lamiaceae/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Phylogeny | 26559004 | Bacillus ectoiniformans sp. nov., a halotolerant bacterium isolated from deep-sea sediments. | Zhu D, Zhang P, Niu L, Xie C, Li P, Sun J, Hang F | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000763 | 2015 | ||
Phylogeny | 26654465 | Bacillus cucumis sp. nov. isolated from the rhizosphere of cucumber (Cucumis sativus). | Kampfer P, Busse HJ, Glaeser SP, Kloepper JW, Hu CH, McInroy JA | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000831 | 2015 | ||
Genetics | 27979958 | Draft Genome Sequences of Type Strains Bacillus drentensis DSM 15600T and Bacillus novalis DSM 15603T. | Liu B, Liu GH, Zhu YJ, Wang JP, Che JM, Chen QQ, Chen Z | Genome Announc | 10.1128/genomeA.01423-16 | 2016 | ||
Phylogeny | 29465340 | Bacillus alkalitolerans sp. nov., isolated from marine sediment near a hydrothermal vent. | Liu Y, Yu M, Zhang XH | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002648 | 2018 | Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Hydrothermal Vents/*microbiology, Nucleic Acid Hybridization, Pacific Ocean, Peptidoglycan/chemistry, Phosphatidylglycerols/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Phylogeny | 29948824 | Bacillus ferrooxidans sp. nov., an iron(II)-oxidizing bacterium isolated from paddy soil. | Zhou GW, Yang XR, Su JQ, Zheng BX, Zhu YG | J Microbiol | 10.1007/s12275-018-7543-3 | 2018 | Bacillus/classification/genetics/*isolation & purification/*metabolism, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Ferrous Compounds/*metabolism, Genome, Bacterial, Oryza/microbiology, Oxidation-Reduction, Peptidoglycan/chemistry, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/analysis | Metabolism |
Phylogeny | 33543358 | Neobacillus sedimentimangrovi sp. nov., a Thermophilic Bacterium Isolated from Mangrove Sediment. | Tang R, Zhang Q, Narsing Rao MP, Liu GH, Che JM, Lei M, Liu B, Li WJ, Zhou SG | Curr Microbiol | 10.1007/s00284-021-02360-9 | 2021 | *Bacillus/genetics, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids, Nucleic Acid Hybridization, Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology | Transcriptome |
Phylogeny | 33620309 | Neobacillus endophyticus sp. nov., an endophytic bacterium isolated from Selaginella involvens roots. | Jiang L, Lee MH, Jeong JC, Kim DH, Kim CY, Kim SW, Lee J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004581 | 2021 | ||
Phylogeny | 33625539 | Bacillus salipaludis sp. nov., isolated from saline-alkaline soil. | Xue L, Tang L, Zhao J, Fang Z, Liu H, Qiao J, Zhang G | Arch Microbiol | 10.1007/s00203-021-02239-0 | 2021 | Bacillus/*classification/genetics/isolation & purification/*metabolism, Bacterial Typing Techniques, Base Composition/genetics, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Peptidoglycan/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil/chemistry, Soil Microbiology, Wetlands | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
5900 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15600) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15600 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
23312 | Jeroen Heyrman, Bram Vanparys, Niall A. Logan, An Balcaen, Marina Rodríguez-Díaz, Andreas Felske, Paul De Vos | 10.1099/ijs.0.02723-0 | Bacillus novalis sp. nov., Bacillus vireti sp. nov., Bacillus soli sp. nov., Bacillus bataviensis sp. nov. and Bacillus drentensis sp. nov., from the Drentse A grasslands | IJSEM 54: 47-57 2004 | 14742458 | |
38318 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/6478 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68371 | Automatically annotated from API 50CH acid | |||||
68382 | Automatically annotated from API zym | |||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
70869 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID85436.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
118971 | Curators of the CIP | Collection of Institut Pasteur (CIP 108808) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108808 |