Strain identifier
BacDive ID: 12012
Type strain: 
Species: Chondromyces apiculatus
Strain Designation: Cm a2
Strain history: <- H. Reichenbach, Cm a2
NCBI tax ID(s): 1192034 (strain), 51 (species)
version 8.1 (current version)
General
@ref: 206
BacDive-ID: 12012
DSM-Number: 436
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Chondromyces apiculatus Cm a2 is a mesophilic, Gram-negative bacterium that was isolated from decayed wood.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1192034 | strain |
| 51 | species |
strain history
- @ref: 206
- history: <- H. Reichenbach, Cm a2
doi: 10.13145/bacdive12012.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Myxococcales
- family: Polyangiaceae
- genus: Chondromyces
- species: Chondromyces apiculatus
- full scientific name: Chondromyces apiculatus Thaxter 1897 (Approved Lists 1980)
@ref: 206
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Myxococcales
family: Polyangiaceae
genus: Chondromyces
species: Chondromyces apiculatus
full scientific name: Chondromyces apiculatus Thaxter 1897
strain designation: Cm a2
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.807
Culture and growth conditions
culture medium
- @ref: 206
- name: VY/2 AGAR (DSMZ Medium 9)
- growth: yes
- link: https://mediadive.dsmz.de/medium/9
- composition: Name: VY/2 AGAR (DSMZ Medium 9) Composition: Agar 15.0 g/l Baker's yeast 5.0 g/l CaCl2 x 2 H2O 1.36 g/l Vitamin B12 0.0005 g/l Distilled water
culture temp
- @ref: 206
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.316
compound production
- @ref: 206
- compound: carotenoids
Isolation, sampling and environmental information
isolation
- @ref: 206
- sample type: decayed wood
- geographic location: Minnesota, Minneapolis
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Decomposing plant |
| #Host Body Product | #Plant | #Timber |
Safety information
risk assessment
- @ref: 206
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 206
- description: Chondromyces apiculatus 16S ribosomal RNA gene, complete sequence
- accession: M94274
- length: 1504
- database: ena
- NCBI tax ID: 1192034
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Chondromyces apiculatus DSM 436 | GCA_000601485 | contig | ncbi | 1192034 |
| 66792 | Chondromyces apiculatus DSM 436 | 1192034.3 | wgs | patric | 1192034 |
| 66792 | Chondromyces apiculatus DSM 436 | 2588253911 | draft | img | 1192034 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 51 | no |
| motile | no | 57.961 | no |
| gram-positive | no | 96.096 | no |
| anaerobic | no | 97.486 | no |
| aerobic | yes | 83.341 | no |
| halophile | no | 89.659 | no |
| spore-forming | no | 80.852 | no |
| thermophile | no | 98.303 | yes |
| glucose-util | yes | 75.144 | no |
| flagellated | no | 86.469 | no |
| glucose-ferment | no | 87.331 | no |
External links
@ref: 206
culture collection no.: DSM 436, DSM 14612, NBRC 100084
straininfo link
- @ref: 81231
- straininfo: 47178
literature
- topic: Metabolism
- Pubmed-ID: 30592153
- title: Characterization and structure-guided engineering of the novel versatile terpene monooxygenase CYP109Q5 from Chondromyces apiculatus DSM436.
- authors: Klenk JM, Dubiel P, Sharma M, Grogan G, Hauer B
- journal: Microb Biotechnol
- DOI: 10.1111/1751-7915.13354
- year: 2018
- mesh: Catalytic Domain, Crystallography, X-Ray, *Genetic Engineering, Mixed Function Oxygenases/chemistry/*genetics/*metabolism, Models, Molecular, Myxococcales/*enzymology/*metabolism, Protein Conformation, Terpenes/*metabolism
- topic2: Biotechnology
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 206 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 436) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-436 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 81231 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47178.1 | StrainInfo: A central database for resolving microbial strain identifiers |