Strain identifier
BacDive ID: 11958
Type strain: 
Species: Planococcus antarcticus
Strain history: <- S. Shivaji; CMS 3or
NCBI tax ID(s): 161360 (species)
version 8.1 (current version)
General
@ref: 5379
BacDive-ID: 11958
DSM-Number: 14504
keywords: 16S sequence, Bacteria, mesophilic
description: Planococcus antarcticus DSM 14504 is a mesophilic bacterium that was isolated from cyanobacterial mat sample.
NCBI tax id
- NCBI tax id: 161360
- Matching level: species
strain history
- @ref: 5379
- history: <- S. Shivaji; CMS 3or
doi: 10.13145/bacdive11958.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Caryophanaceae
- genus: Planococcus
- species: Planococcus antarcticus
- full scientific name: Planococcus antarcticus Reddy et al. 2002
@ref: 5379
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Caryophanaceae
genus: Planococcus
species: Planococcus antarcticus
full scientific name: Planococcus antarcticus Reddy et al. 2002
type strain: no
Culture and growth conditions
culture medium
- @ref: 5379
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 5379
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
murein
- @ref: 5379
- murein short key: A11.33
- type: A4alpha L-Lys-D-Glu
Isolation, sampling and environmental information
isolation
- @ref: 5379
- sample type: cyanobacterial mat sample
- geographic location: Antarctica,McMurdo Dry Valleys
- continent: Australia and Oceania
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Microbial community | #Microbial mat |
| #Host | #Microbial | #Bacteria |
taxonmaps
- @ref: 69479
- File name: preview.99_153.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_67;97_70;98_134;99_153&stattab=map
- Last taxonomy: Planococcus antarcticus
- 16S sequence: AJ314744
- Sequence Identity:
- Total samples: 853
- soil counts: 215
- aquatic counts: 111
- animal counts: 267
- plant counts: 260
Safety information
risk assessment
- @ref: 5379
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5379
- description: Planococcus southpolaris partial 16S rRNA gene, strain CMS 3or
- accession: AJ314744
- length: 1482
- database: ena
- NCBI tax ID: 161360
External links
@ref: 5379
culture collection no.: DSM 14504, MTCC 3856, CMS 3or
straininfo link
- @ref: 81171
- straininfo: 113539
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5379 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14504) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14504 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 81171 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID113539.1 | StrainInfo: A central database for resolving microbial strain identifiers |