Strain identifier
BacDive ID: 11957
Type strain:
Species: Planococcus antarcticus
Strain history: <- S. Shivaji; CMS 84or
NCBI tax ID(s): 161360 (species)
version 8.1 (current version)
General
@ref: 5272
BacDive-ID: 11957
DSM-Number: 14506
keywords: 16S sequence, Bacteria, mesophilic
description: Planococcus antarcticus DSM 14506 is a mesophilic bacterium that was isolated from cyanobacterial mat sample.
NCBI tax id
- NCBI tax id: 161360
- Matching level: species
strain history
- @ref: 5272
- history: <- S. Shivaji; CMS 84or
doi: 10.13145/bacdive11957.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Caryophanaceae
- genus: Planococcus
- species: Planococcus antarcticus
- full scientific name: Planococcus antarcticus Reddy et al. 2002
@ref: 5272
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Caryophanaceae
genus: Planococcus
species: Planococcus antarcticus
full scientific name: Planococcus antarcticus Reddy et al. 2002
type strain: no
Culture and growth conditions
culture medium
- @ref: 5272
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
- @ref: 5272
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
murein
- @ref: 5272
- murein short key: A11.33
- type: A4alpha L-Lys-D-Glu
Isolation, sampling and environmental information
isolation
- @ref: 5272
- sample type: cyanobacterial mat sample
- geographic location: Antarctica, McMurdo Dry Valleys
- continent: Australia and Oceania
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Microbial community | #Microbial mat |
#Host | #Microbial | #Bacteria |
taxonmaps
- @ref: 69479
- File name: preview.99_153.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_67;97_70;98_134;99_153&stattab=map
- Last taxonomy: Planococcus antarcticus
- 16S sequence: AJ314747
- Sequence Identity:
- Total samples: 853
- soil counts: 215
- aquatic counts: 111
- animal counts: 267
- plant counts: 260
Safety information
risk assessment
- @ref: 5272
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5272
- description: Planococcus southpolaris partial 16S rRNA gene, strain CMS 84or
- accession: AJ314747
- length: 1482
- database: ena
- NCBI tax ID: 161360
External links
@ref: 5272
culture collection no.: DSM 14506, MTCC 3845, CMS 84or
straininfo link
- @ref: 81170
- straininfo: 113540
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
5272 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14506) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14506 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
81170 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID113540.1 | StrainInfo: A central database for resolving microbial strain identifiers |