Strain identifier

BacDive ID: 11928

Type strain: No

Species: Hydrogenovibrio crunogenus

Strain Designation: MA-3

Strain history: <- J. Kuever <- C.O. Wirsen, MA-3

NCBI tax ID(s): 39765 (species)

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General

@ref: 4713

BacDive-ID: 11928

DSM-Number: 12354

keywords: 16S sequence, Bacteria

description: Hydrogenovibrio crunogenus MA-3 is a bacterium that was isolated from surface scrapings of a polymetal sulfide rock.

NCBI tax id

  • NCBI tax id: 39765
  • Matching level: species

strain history

  • @ref: 4713
  • history: <- J. Kuever <- C.O. Wirsen, MA-3

doi: 10.13145/bacdive11928.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Beggiatoales
  • family: Piscirickettsiaceae
  • genus: Hydrogenovibrio
  • species: Hydrogenovibrio crunogenus
  • full scientific name: Hydrogenovibrio crunogenus (Jannasch et al. 1985) Boden et al. 2017

  • synonyms

    • @ref: 20215
    • synonym: Thiomicrospira crunogena

@ref: 4713

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Thiotrichales

family: Piscirickettsiaceae

genus: Hydrogenovibrio

species: Hydrogenovibrio crunogenus

full scientific name: Hydrogenovibrio crunogenus (Jannasch et al. 1985) Boden et al. 2017

strain designation: MA-3

type strain: no

Culture and growth conditions

culture medium

  • @ref: 4713
  • name: THIOMICROSPIRA PELOPHILA MEDIUM (DSMZ Medium 142)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/142
  • composition: Name: THIOMICROSPIRA PELOPHILA MEDIUM (DSMZ Medium 142) Composition: NaCl 24.8756 g/l Na2S2O3 x 5 H2O 4.97512 g/l MgSO4 x 7 H2O 1.49254 g/l (NH4)2SO4 0.995025 g/l K2HPO4 0.497512 g/l Na2-EDTA 0.00995025 g/l ZnSO4 x 7 H2O 0.00437811 g/l Bromothymol blue 0.0039801 g/l CaCl2 x 2 H2O 0.00110249 g/l MnCl2 x 4 H2O 0.00100697 g/l FeSO4 x 7 H2O 0.000995025 g/l CoCl2 x 6 H2O 0.000320398 g/l CuSO4 x 5 H2O 0.000312438 g/l Pyridoxine hydrochloride 0.000298507 g/l (NH4)6Mo7O24 x 4 H2O 0.000218905 g/l Nicotinic acid 0.000199005 g/l Thiamine-HCl x 2 H2O 0.000199005 g/l Vitamin B12 9.95025e-05 g/l Calcium pantothenate 9.95025e-05 g/l p-Aminobenzoic acid 7.9602e-05 g/l D-(+)-biotin 1.99005e-05 g/l Distilled water

culture temp

  • @ref: 4713
  • growth: positive
  • type: growth
  • temperature: 25

Isolation, sampling and environmental information

isolation

  • @ref: 4713
  • sample type: surface scrapings of a polymetal sulfide rock
  • geographic location: Mid-Atlantic Ridge, Trans-Atlantic Geotransverse hydrothermal vent site, 3620 m depth
  • latitude: 26.1333
  • longitude: -44.8167

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Geologic

taxonmaps

  • @ref: 69479
  • File name: preview.99_1999.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_118;96_1109;97_1299;98_1564;99_1999&stattab=map
  • Last taxonomy: Hydrogenovibrio crunogenus subclade
  • 16S sequence: AF069959
  • Sequence Identity:
  • Total samples: 900
  • soil counts: 104
  • aquatic counts: 727
  • animal counts: 48
  • plant counts: 21

Safety information

risk assessment

  • @ref: 4713
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 4713
  • description: Thiomicrospira crunogena 16S ribosomal RNA gene, partial sequence
  • accession: AF069959
  • length: 1491
  • database: nuccore
  • NCBI tax ID: 39765

GC content

  • @ref: 4713
  • GC-content: 44.6
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 4713

culture collection no.: DSM 12354, ATCC 700270

straininfo link

  • @ref: 81142
  • straininfo: 49277

Reference

@idauthorscataloguedoi/urltitle
4713Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12354)https://www.dsmz.de/collection/catalogue/details/culture/DSM-12354
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
81142Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49277.1StrainInfo: A central database for resolving microbial strain identifiers