Strain identifier
BacDive ID: 11926
Type strain: 
Species: Hydrogenovibrio crunogenus
Strain Designation: L-12
Strain history: <- J. Kuever, Max-Planck-Inst. Marine Microbiology, Bremen, Germany; L-12 <- C. O. Wirsen, Woods Hole Oceanographic Inst., Massachusetts, USA <- E. G. Ruby and H. W. Jannasch
NCBI tax ID(s): 39765 (species)
version 9 (current version)
General
@ref: 4707
BacDive-ID: 11926
DSM-Number: 12346
keywords: Bacteria
description: Hydrogenovibrio crunogenus L-12 is a bacterium that was isolated from water and mussel periostracum.
NCBI tax id
- NCBI tax id: 39765
- Matching level: species
strain history
- @ref: 4707
- history: <- J. Kuever, Max-Planck-Inst. Marine Microbiology, Bremen, Germany; L-12 <- C. O. Wirsen, Woods Hole Oceanographic Inst., Massachusetts, USA <- E. G. Ruby and H. W. Jannasch
doi: 10.13145/bacdive11926.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Beggiatoales
- family: Piscirickettsiaceae
- genus: Hydrogenovibrio
- species: Hydrogenovibrio crunogenus
- full scientific name: Hydrogenovibrio crunogenus (Jannasch et al. 1985) Boden et al. 2017
synonyms
- @ref: 20215
- synonym: Thiomicrospira crunogena
@ref: 4707
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Thiotrichales
family: Piscirickettsiaceae
genus: Hydrogenovibrio
species: Hydrogenovibrio crunogenus
full scientific name: Hydrogenovibrio crunogenus (Jannasch et al. 1985) Boden et al. 2017
strain designation: L-12
type strain: no
Culture and growth conditions
culture medium
- @ref: 4707
- name: THIOMICROSPIRA PELOPHILA MEDIUM (DSMZ Medium 142)
- growth: yes
- link: https://mediadive.dsmz.de/medium/142
- composition: Name: THIOMICROSPIRA PELOPHILA MEDIUM (DSMZ Medium 142) Composition: NaCl 24.8756 g/l Na2S2O3 x 5 H2O 4.97512 g/l MgSO4 x 7 H2O 1.49254 g/l (NH4)2SO4 0.995025 g/l K2HPO4 0.497512 g/l Na2-EDTA 0.00995025 g/l ZnSO4 x 7 H2O 0.00437811 g/l Bromothymol blue 0.0039801 g/l CaCl2 x 2 H2O 0.00110249 g/l MnCl2 x 4 H2O 0.00100697 g/l FeSO4 x 7 H2O 0.000995025 g/l CoCl2 x 6 H2O 0.000320398 g/l CuSO4 x 5 H2O 0.000312438 g/l Pyridoxine hydrochloride 0.000298507 g/l (NH4)6Mo7O24 x 4 H2O 0.000218905 g/l Nicotinic acid 0.000199005 g/l Thiamine-HCl x 2 H2O 0.000199005 g/l Vitamin B12 9.95025e-05 g/l Calcium pantothenate 9.95025e-05 g/l p-Aminobenzoic acid 7.9602e-05 g/l D-(+)-biotin 1.99005e-05 g/l Distilled water
culture temp
- @ref: 4707
- growth: positive
- type: growth
- temperature: 25
Isolation, sampling and environmental information
isolation
- @ref: 4707
- sample type: water and mussel periostracum
- geographic location: Galapagos Rift region, 2550 m depth
- country: Ecuador
- origin.country: ECU
- continent: Middle and South America
- latitude: 0.7042
- longitude: -86.2247
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | |
| #Host | #Invertebrates (Other) | #Mollusca |
Safety information
risk assessment
- @ref: 4707
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
GC content
- @ref: 4707
- GC-content: 44.4
- method: high performance liquid chromatography (HPLC)
External links
@ref: 4707
culture collection no.: DSM 12346
straininfo link
- @ref: 81140
- straininfo: 49276
literature
| Pubmed-ID | title | authors | journal | DOI | year | topic | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| 9758841 | Comparison of a new thiomicrospira strain from the mid-atlantic ridge with known hydrothermal vent isolates | Wirsen CO, Brinkhoff T, Kuever J, Muyzer G, Molyneaux S, Jannasch HW | Appl Environ Microbiol | 10.1128/AEM.64.10.4057-4059.1998 | 1998 | |||
| 15545479 | Thiomicrospira thermophila sp. nov., a novel microaerobic, thermotolerant, sulfur-oxidizing chemolithomixotroph isolated from a deep-sea hydrothermal fumarole in the TOTO caldera, Mariana Arc, Western Pacific. | Takai K, Hirayama H, Nakagawa T, Suzuki Y, Nealson KH, Horikoshi K | Int J Syst Evol Microbiol | 10.1099/ijs.0.63284-0 | 2004 | Phylogeny | Bacterial Typing Techniques, Base Composition, Carbon Dioxide/metabolism, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Flagella/ultrastructure, Genes, rRNA, Molecular Sequence Data, Movement, Nucleic Acid Hybridization, Oxidation-Reduction, Oxygen/metabolism, Pacific Ocean, Phylogeny, Piscirickettsiaceae/*classification/cytology/*isolation & purification/physiology, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sulfur Compounds/*metabolism, Temperature, Water Microbiology | Metabolism |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4707 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12346) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12346 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 81140 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49276.1 | StrainInfo: A central database for resolving microbial strain identifiers |