Strain identifier

BacDive ID: 11911

Type strain: Yes

Species: Thioalkalimicrobium sibiricum

Strain Designation: AL7

Strain history: <- D. Y. Sorokin; AL7

NCBI tax ID(s): 92246 (species)

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General

@ref: 5138

BacDive-ID: 11911

DSM-Number: 13740

keywords: 16S sequence, Bacteria, obligate aerobe, chemolithoautotroph, mesophilic, motile, vibrio-shaped

description: Thioalkalimicrobium sibiricum AL7 is an obligate aerobe, chemolithoautotroph, mesophilic bacterium that was isolated from soda lake.

NCBI tax id

  • NCBI tax id: 92246
  • Matching level: species

strain history

  • @ref: 5138
  • history: <- D. Y. Sorokin; AL7

doi: 10.13145/bacdive11911.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Beggiatoales
  • family: Piscirickettsiaceae
  • genus: Thioalkalimicrobium
  • species: Thioalkalimicrobium sibiricum
  • full scientific name: Thioalkalimicrobium sibiricum corrig. Sorokin et al. 2001

  • synonyms

    @refsynonym
    20215Thialkalimicrobium sibiricum
    20215Thioalkalimicrobium sibericum
    20215Thiomicrospira sibirica

@ref: 5138

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Thiotrichales

family: Piscirickettsiaceae

genus: Thiomicrospira

species: Thiomicrospira sibirica

full scientific name: Thiomicrospira sibirica (Sorokin et al. 2001) Boden et al. 2017

strain designation: AL7

type strain: yes

Morphology

cell morphology

  • @ref: 43182
  • cell length: 0.8-1.5 µm
  • cell width: 0.4-0.5 µm
  • cell shape: vibrio-shaped
  • motility: yes

colony morphology

  • @ref: 43182
  • colony color: pink

Culture and growth conditions

culture medium

  • @ref: 5138
  • name: ALKALIPHILIC SULPHUR RESPIRING STRAINS MEDIUM (DSMZ Medium 925)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/925
  • composition: Name: ALKALIPHILIC SULPHUR RESPIRING STRAINS MEDIUM (DSMZ Medium 925) Composition: Na2CO3 20.0 g/l NaHCO3 10.0 g/l NaCl 5.0 g/l K2HPO4 1.0 g/l MgCl2 x 6 H2O 0.2 g/l H3BO3 0.0006 g/l CoCl2 x 6 H2O 0.0004 g/l ZnSO4 x 7 H2O 0.0002 g/l Na2MoO4 x 2 H2O 6e-05 g/l MnCl2 x 4 H2O 6e-05 g/l NiCl2 x 6 H2O 4e-05 g/l CuCl2 x 2 H2O 2e-05 g/l EDTA 1e-05 g/l FeSO4 x 7 H2O 4e-06 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
5138positivegrowth30mesophilic
43182positivemaximum41thermophilic

culture pH

@refabilitytypepHPH range
43182positiveoptimum9.8-10.0alkaliphile
43182positiveminimum7.5
43182positivemaximum10.6

Physiology and metabolism

oxygen tolerance

  • @ref: 43182
  • oxygen tolerance: obligate aerobe

nutrition type

  • @ref: 43182
  • type: chemolithoautotroph

halophily

  • @ref: 43182
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 1.201 M

observation

  • @ref: 43182
  • observation: produce carboxysomes

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4318215226tetrathionate-energy source
4318216094thiosulfate+electron donor
4318233403elemental sulfur+electron donor
4318215226tetrathionate+electron donor
4318215987trithionate+electron donor
4318215138sulfide+electron donor
4318218022thiocyanate-electron donor
4318217359sulfite-electron donor
4318218248iron-electron donor
4318218291manganese-electron donor
4318218276dihydrogen-electron donor

metabolite production

@refChebi-IDmetaboliteproduction
4318230411cobalaminyes
4318233403elemental sulfurno

enzymes

  • @ref: 43182
  • value: cytochrome oxidase
  • activity: +
  • ec: 1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
5138soda lakeSiberiaRussiaRUSAsia
43182region of north-eastern AsiaAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Condition#Alkaline

Safety information

risk assessment

  • @ref: 5138
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 5138
  • description: Thioalcalomicrobium sibericum 16S ribosomal RNA, partial sequence
  • accession: AF126549
  • length: 1494
  • database: ena
  • NCBI tax ID: 92246

GC content

@refGC-content
513864.2
4318248.9

External links

@ref: 5138

culture collection no.: DSM 13740, NCCB 100000

straininfo link

  • @ref: 81125
  • straininfo: 101020

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5138Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13740)https://www.dsmz.de/collection/catalogue/details/culture/DSM-13740
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
43182Rich Boden, Kathleen M. Scott, John Williams, Sydney Russel, Kirsten Antonen, Alex W. Rae and Lee P. Hutt10.1099/ijsem.0.001855An evaluation of Thiomicrospira, Hydrogenovibrio and Thioalkalimicrobium: reclassification of four species of Thiomicrospira to each Thiomicrorhabdus gen. nov. and Hydrogenovibrio, and reclassification of all four species of Thioalkalimicrobium to ThiomicrospiraIJSEM 67: 1140-1151 201728581925
81125Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID101020.1StrainInfo: A central database for resolving microbial strain identifiers