Strain identifier

BacDive ID: 11907

Type strain: Yes

Species: Methylophaga thiooxydans

Strain history: <- R. Boden, Univ. Warwick, Coventry, U.K.; DMS010 <- H. Schäfer

NCBI tax ID(s): 392484 (species)

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General

@ref: 16052

BacDive-ID: 11907

DSM-Number: 22068

keywords: 16S sequence, Bacteria, mesophilic

description: Methylophaga thiooxydans DSM 22068 is a mesophilic bacterium that was isolated from pooled cultures of Emiliania huxleyi.

NCBI tax id

  • NCBI tax id: 392484
  • Matching level: species

strain history

  • @ref: 16052
  • history: <- R. Boden, Univ. Warwick, Coventry, U.K.; DMS010 <- H. Schäfer

doi: 10.13145/bacdive11907.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Beggiatoales
  • family: Piscirickettsiaceae
  • genus: Methylophaga
  • species: Methylophaga thiooxydans
  • full scientific name: Methylophaga thiooxydans corrig. Boden et al. 2011

  • synonyms

    • @ref: 20215
    • synonym: Methylophaga thiooxidans

@ref: 16052

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Thiotrichales

family: Piscirickettsiaceae

genus: Methylophaga

species: Methylophaga thiooxydans

full scientific name: Methylophaga thiooxydans Boden et al. 2011

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 16052
  • name: MARINE AMMONIUM MINERAL SALTS (DSMZ Medium 1313)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1313
  • composition: Name: MARINE AMMONIUM MINERAL SALTS (DSMZ Medium 1313) Composition: NaCl 20.0 g/l K2HPO4 2.34 g/l (NH4)2SO4 0.999999 g/l MgSO4 x 7 H2O 0.999999 g/l KH2PO4 0.36 g/l CaCl2 x 2 H2O 0.2 g/l Na2WO4 x 2 H2O 0.003 g/l FeSO4 x 7 H2O 0.002 g/l FeCl2 x 4 H2O 0.00149254 g/l Pyridoxine hydrochloride 0.0005 g/l Para-aminobenzoic acid 0.0003 g/l Thiamine 0.0002 g/l Nicotinic acid 0.0002 g/l MnCl2 x 4 H2O 0.000199005 g/l CoCl2 x 6 H2O 0.000189055 g/l Riboflavin 0.0001 g/l Cyanocobalamin 0.0001 g/l Calcium pantothenate 0.0001 g/l ZnCl2 6.96517e-05 g/l Lipoic acid 5e-05 g/l Folic acid 5e-05 g/l Na2MoO4 x 2 H2O 3.58209e-05 g/l NiCl2 x 6 H2O 2.38806e-05 g/l Biotin 2e-05 g/l H3BO3 5.97015e-06 g/l CuCl2 x 2 H2O 1.99005e-06 g/l HCl Distilled water

culture temp

  • @ref: 16052
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 16052
  • sample type: pooled cultures of Emiliania huxleyi
  • host species: Emiliania huxleyi
  • geographic location: Achmelvich Bay
  • country: United Kingdom
  • origin.country: GBR
  • continent: Europe

isolation source categories

  • Cat1: #Host
  • Cat2: #Other

taxonmaps

  • @ref: 69479
  • File name: preview.99_159.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_54;96_118;97_125;98_140;99_159&stattab=map
  • Last taxonomy: Methylophaga thiooxydans subclade
  • 16S sequence: DQ660915
  • Sequence Identity:
  • Total samples: 912
  • soil counts: 110
  • aquatic counts: 657
  • animal counts: 131
  • plant counts: 14

Safety information

risk assessment

  • @ref: 16052
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16052
  • description: Methylophaga thiooxydans DMS010 16S ribosomal RNA gene, partial sequence
  • accession: DQ660915
  • length: 1446
  • database: ena
  • NCBI tax ID: 637616

External links

@ref: 16052

culture collection no.: DSM 22068, VKM B-2586, DMS 010

straininfo link

  • @ref: 81122
  • straininfo: 403919

literature

  • topic: Genetics
  • Pubmed-ID: 21478352
  • title: Draft genome sequence of the chemolithoheterotrophic, halophilic methylotroph Methylophaga thiooxydans DMS010.
  • authors: Boden R, Ferriera S, Johnson J, Kelly DP, Murrell JC, Schafer H
  • journal: J Bacteriol
  • DOI: 10.1128/JB.00388-11
  • year: 2011
  • mesh: Gene Expression Regulation, Bacterial/physiology, Genome, Bacterial, Molecular Sequence Data, Piscirickettsiaceae/*genetics/*metabolism
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitle
16052Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22068)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22068
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
81122Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID403919.1StrainInfo: A central database for resolving microbial strain identifiers