Strain identifier

BacDive ID: 11890

Type strain: Yes

Species: Mesorhizobium thiogangeticum

Strain Designation: SJT

Strain history: CIP <- 2006, MTCC

NCBI tax ID(s): 302401 (species)

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General

@ref: 6758

BacDive-ID: 11890

DSM-Number: 17097

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Mesorhizobium thiogangeticum SJT is an aerobe, mesophilic, Gram-negative bacterium that was isolated from rhizosphere soil of the Indian tropical leguminous plant Clitoria ternatea.

NCBI tax id

  • NCBI tax id: 302401
  • Matching level: species

strain history

@refhistory
6758<- P. Roy, Dept. Microbiol., Bose Inst., India; SJT <- W. Ghosh et al.
340182006, MTCC
123522CIP <- 2006, MTCC

doi: 10.13145/bacdive11890.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Phyllobacteriaceae
  • genus: Mesorhizobium
  • species: Mesorhizobium thiogangeticum
  • full scientific name: Mesorhizobium thiogangeticum Ghosh and Roy 2006

@ref: 6758

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Phyllobacteriaceae

genus: Mesorhizobium

species: Mesorhizobium thiogangeticum

full scientific name: Mesorhizobium thiogangeticum Ghosh and Roy 2006

strain designation: SJT

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
31651negative1.2-1.5 µm0.2-0.4 µmrod-shaped
123522negativerod-shapedno

pigmentation

  • @ref: 31651
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6758LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)yeshttps://mediadive.dsmz.de/medium/381Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water
34018MEDIUM 368 - for Luria bertaniyesDistilled water make up to (1000.000 ml);Sodium chloride (10.000 g);Agar(15.000 g);Yeast extract (5.000 g);Tryptone (10.000 g)
6758NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
123522CIP Medium 368yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=368

culture temp

@refgrowthtypetemperaturerange
6758positivegrowth28mesophilic
31651positivegrowth30-37mesophilic
31651positiveoptimum30-37mesophilic
34018positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
31651positivegrowth5.5-8.5alkaliphile
31651positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31651aerobe
123522obligate aerobe

spore formation

  • @ref: 31651
  • spore formation: no

observation

  • @ref: 31651
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3165122599arabinose+carbon source
3165128260galactose+carbon source
3165117234glucose+carbon source
3165127570histidine+carbon source
3165125017leucine+carbon source
3165129864mannitol+carbon source
3165130031succinate+carbon source
12352217632nitrate-reduction
12352216301nitrite+reduction

metabolite production

  • @ref: 123522
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
31651catalase+1.11.1.6
123522oxidase-
123522catalase+1.11.1.6
123522urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123522-+-+-++++-++---++---

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
6758rhizosphere soil of the Indian tropical leguminous plant Clitoria ternateaClitoria ternateaGangetic plains of West Bengal, KolkataIndiaINDAsia
123522Environment, Soil, Clitoria ternateaGangetic plainsIndiaINDAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Rhizosphere

taxonmaps

  • @ref: 69479
  • File name: preview.99_58726.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_220;97_10697;98_34384;99_58726&stattab=map
  • Last taxonomy: Mesorhizobium
  • 16S sequence: AJ864462
  • Sequence Identity:
  • Total samples: 23
  • soil counts: 9
  • aquatic counts: 3
  • animal counts: 6
  • plant counts: 5

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
67581Risk group (German classification)
1235221Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6758
  • description: Mesorhizobium thiogangeticum 16S rRNA gene, type strain SJTT
  • accession: AJ864462
  • length: 1411
  • database: ena
  • NCBI tax ID: 302401

GC content

@refGC-contentmethod
675859.6high performance liquid chromatography (HPLC)
3165159.6

External links

@ref: 6758

culture collection no.: DSM 17097, LMG 22697, MTCC 7001, CIP 109173

straininfo link

  • @ref: 81107
  • straininfo: 135990

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16403872Mesorhizobium thiogangeticum sp. nov., a novel sulfur-oxidizing chemolithoautotroph from rhizosphere soil of an Indian tropical leguminous plant.Ghosh W, Roy PInt J Syst Evol Microbiol10.1099/ijs.0.63967-02006Bacterial Proteins/genetics, Base Composition, Clitoria/*microbiology, Fatty Acids, India, Molecular Sequence Data, Oxidation-Reduction, Plant Roots/microbiology, Proteobacteria/chemistry/*classification/isolation & purification/physiology, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Rec A Recombinases/genetics, Sequence Homology, Nucleic Acid, *Soil Microbiology, Species Specificity, Sulfur/metabolism, Thiosulfates/metabolismGenetics
Phylogeny27535803Mesorhizobium sediminum sp. nov., isolated from deep-sea sediment.Yuan CG, Jiang Z, Xiao M, Zhou EM, Kim CJ, Hozzein WN, Park DJ, Zhi XY, Li WJInt J Syst Evol Microbiol10.1099/ijsem.0.0014322016Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Indian Ocean, Mesorhizobium/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
6758Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17097)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17097
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31651Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2793328776041
34018Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6885
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
81107Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID135990.1StrainInfo: A central database for resolving microbial strain identifiers
123522Curators of the CIPCollection of Institut Pasteur (CIP 109173)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109173