Strain identifier
BacDive ID: 11873
Type strain: 
Species: Nitratireductor lucknowense
Strain Designation: IITR-21
Strain history: <- S. Mayilraj, MTCC; IITR-21 <- N. Manickam
NCBI tax ID(s): 943348 (species)
version 8.1 (current version)
General
@ref: 17433
BacDive-ID: 11873
DSM-Number: 24322
keywords: 16S sequence, Bacteria
description: Nitratireductor lucknowense IITR-21 is a bacterium that was isolated from pesticide contaminated soil from a gamma-HCH manufacturing industrial site.
NCBI tax id
- NCBI tax id: 943348
- Matching level: species
strain history
- @ref: 17433
- history: <- S. Mayilraj, MTCC; IITR-21 <- N. Manickam
doi: 10.13145/bacdive11873.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Phyllobacteriaceae
- genus: Nitratireductor
- species: Nitratireductor lucknowense
- full scientific name: Nitratireductor lucknowense Manickam et al. 2012
@ref: 17433
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Phyllobacteriaceae
genus: Nitratireductor
species: Nitratireductor lucknowense
full scientific name: Nitratireductor lucknowense Manickam et al.
strain designation: IITR-21
type strain: no
Isolation, sampling and environmental information
isolation
- @ref: 17433
- sample type: pesticide contaminated soil from a gamma-HCH (lindane) manufacturing industrial site
- geographic location: Lucknow
- country: India
- origin.country: IND
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Contamination | |
| #Engineered | #Industrial | |
| #Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_178926.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_220;97_697;98_1604;99_178926&stattab=map
- Last taxonomy: Mesorhizobium
- 16S sequence: HQ658355
- Sequence Identity:
- Total samples: 14
- soil counts: 3
- aquatic counts: 9
- animal counts: 2
Sequence information
16S sequences
- @ref: 17433
- description: Nitratireductor lucknowense 16S ribosomal RNA gene, partial sequence
- accession: HQ658355
- length: 1449
- database: ena
- NCBI tax ID: 943348
GC content
- @ref: 17433
- GC-content: 62.4
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 17433
culture collection no.: DSM 24322, MTCC 8354
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 21833481 | Nitratireductor lucknowense sp. nov., a novel bacterium isolated from a pesticide contaminated soil. | Manickam N, Pareek S, Kaur I, Singh NK, Mayilraj S | Antonie Van Leeuwenhoek | 10.1007/s10482-011-9623-9 | 2011 | Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Pesticides/metabolism, Phyllobacteriaceae/*classification/genetics/*isolation & purification/metabolism, Phylogeny, Pigments, Biological/metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Soil Pollutants/metabolism | Metabolism |
| Phylogeny | 28056221 | Nitratireductor aestuarii sp. nov., a marine alphaproteobacterium isolated from an estuary. | Ou D, Huang H, Bai R, Li Q, Wang Y, Yin Y | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001771 | 2017 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, *Estuaries, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phyllobacteriaceae/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
| Phylogeny | 29683414 | Pinisolibacter ravus gen. nov., sp. nov., isolated from pine forest soil and allocation of the genera Ancalomicrobium and Pinisolibacter to the family Ancalomicrobiaceae fam. nov., and emendation of the genus Ancalomicrobium Staley 1968. | Dahal RH, Chaudhary DK, Kim J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002772 | 2018 | Alphaproteobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, Phospholipids/chemistry, *Phylogeny, *Pinus, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 17433 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24322) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24322 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |