Strain identifier
BacDive ID: 11812
Type strain: 
Species: Desulfotomaculum sp.
Strain Designation: SDN4
Strain history: <- Y. Tanimoto; SDN4 <- Y. Tanimoto and F. Bak {1992}
NCBI tax ID(s): 449310 (species)
version 9 (current version)
General
@ref: 3177
BacDive-ID: 11812
DSM-Number: 7475
keywords: 16S sequence, Bacteria, anaerobe
description: Desulfotomaculum sp. SDN4 is an anaerobe bacterium that was isolated from thermophilic fermenter sludge.
NCBI tax id
- NCBI tax id: 449310
- Matching level: species
strain history
- @ref: 3177
- history: <- Y. Tanimoto; SDN4 <- Y. Tanimoto and F. Bak {1992}
doi: 10.13145/bacdive11812.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Peptococcaceae
- genus: Desulfotomaculum
- species: Desulfotomaculum sp.
- full scientific name: Desulfotomaculum Campbell and Postgate 1965 (Approved Lists 1980)
@ref: 3177
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Peptococcaceae
genus: Desulfotomaculum
species: Desulfotomaculum sp.
full scientific name: Desulfotomaculum sp.
strain designation: SDN4
type strain: no
Culture and growth conditions
culture medium
- @ref: 3177
- name: DESULFOBULBUS SP. MEDIUM (FRESHWATER) (DSMZ Medium 194)
- growth: yes
- link: https://mediadive.dsmz.de/medium/194
- composition: Name: DESULFOBULBUS SP. MEDIUM (FRESHWATER) (DSMZ Medium 194; with strain-specific modifications) Composition: Na2SO4 2.99103 g/l Na2CO3 1.49551 g/l NaCl 0.997009 g/l KCl 0.498504 g/l None 0.398804 g/l Na2S x 9 H2O 0.398804 g/l MgCl2 x 6 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water
culture temp
- @ref: 3177
- growth: positive
- type: growth
- temperature: 55
Physiology and metabolism
oxygen tolerance
- @ref: 3177
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 3177
- sample type: thermophilic fermenter sludge
- geographic location: Tokyo
- country: Japan
- origin.country: JPN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Biodegradation | |
| #Environmental | #Terrestrial | #Mud (Sludge) |
| #Condition | #Thermophilic (>45°C) |
Sequence information
16S sequences
- @ref: 3177
- description: Desulfotomaculum sp. 16S rRNA gene, DSM 7475
- accession: Y11580
- length: 1556
- database: nuccore
- NCBI tax ID: 41211
External links
@ref: 3177
culture collection no.: DSM 7475
straininfo link
- @ref: 81030
- straininfo: 48451
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 3177 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7475) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-7475 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 81030 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48451.1 | StrainInfo: A central database for resolving microbial strain identifiers |