Strain identifier

BacDive ID: 11802

Type strain: Yes

Species: Desulfallas sapomandens

Strain Designation: Pato

Strain history: <- R. Cord-Ruwisch, Pato

NCBI tax ID(s): 102170 (species)

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General

@ref: 1319

BacDive-ID: 11802

DSM-Number: 3223

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Desulfallas sapomandens Pato is an anaerobe, mesophilic bacterium that was isolated from soil from a gasoline station.

NCBI tax id

  • NCBI tax id: 102170
  • Matching level: species

strain history

  • @ref: 1319
  • history: <- R. Cord-Ruwisch, Pato

doi: 10.13145/bacdive11802.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Peptococcaceae
  • genus: Desulfallas
  • species: Desulfallas sapomandens
  • full scientific name: Desulfallas sapomandens (Cord-Ruwisch and Garcia 1990) Watanabe et al. 2018

  • synonyms

    • @ref: 20215
    • synonym: Desulfotomaculum sapomandens

@ref: 1319

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Peptococcaceae

genus: Desulfallas

species: Desulfallas sapomandens

full scientific name: Desulfallas sapomandens (Cord-Ruwisch and Garcia 1990) Watanabe et al. 2018

strain designation: Pato

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 1319
  • name: DESULFALLAS MEDIUM (DSMZ Medium 346)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/346
  • composition: Name: DESULFALLAS MEDIUM (DSMZ Medium 346) Composition: Na2SO4 2.96443 g/l NaCl 0.988145 g/l Na-benzoate 0.6917 g/l MgCl2 x 6 H2O 0.395257 g/l NH4Cl 0.296443 g/l KH2PO4 0.197628 g/l CaCl2 x 2 H2O 0.148222 g/l Na2S2O4 0.0494071 g/l NaHCO3 0.0494071 g/l Na2S x 9 H2O 0.041996 g/l HCl 0.00247036 g/l FeCl2 x 4 H2O 0.00148221 g/l Sodium resazurin 0.000494071 g/l CoCl2 x 6 H2O 0.000187747 g/l Pyridoxine hydrochloride 9.88142e-05 g/l MnCl2 x 4 H2O 9.88142e-05 g/l ZnCl2 6.917e-05 g/l Calcium D-(+)-pantothenate 4.94071e-05 g/l p-Aminobenzoic acid 4.94071e-05 g/l Nicotinic acid 4.94071e-05 g/l Riboflavin 4.94071e-05 g/l Thiamine HCl 4.94071e-05 g/l (DL)-alpha-Lipoic acid 4.94071e-05 g/l Na2MoO4 x 2 H2O 3.55731e-05 g/l NiCl2 x 6 H2O 2.37154e-05 g/l Biotin 1.97628e-05 g/l Folic acid 1.97628e-05 g/l H3BO3 5.92885e-06 g/l CuCl2 x 2 H2O 1.97628e-06 g/l Vitamin B12 9.88142e-07 g/l Ethanol Distilled water

culture temp

  • @ref: 1319
  • growth: positive
  • type: growth
  • temperature: 35
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 1319
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 1319
  • sample type: soil from a gasoline station
  • geographic location: Konstanz
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Built environment
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_176356.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_377;96_65448;97_84953;98_115281;99_176356&stattab=map
  • Last taxonomy: Desulfallas sapomandens subclade
  • 16S sequence: AF168365
  • Sequence Identity:
  • Total samples: 45
  • soil counts: 13
  • aquatic counts: 19
  • animal counts: 12
  • plant counts: 1

Safety information

risk assessment

  • @ref: 1319
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 1319
  • description: Desulfotomaculum sapomandens 16S ribosomal RNA gene, partial sequence
  • accession: AF168365
  • length: 1424
  • database: ena
  • NCBI tax ID: 102170

GC content

  • @ref: 1319
  • GC-content: 48.0

External links

@ref: 1319

culture collection no.: DSM 3223, NBRC 112755

straininfo link

  • @ref: 81020
  • straininfo: 47702

Reference

@idauthorscataloguedoi/urltitle
1319Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3223)https://www.dsmz.de/collection/catalogue/details/culture/DSM-3223
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
81020Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID47702.1StrainInfo: A central database for resolving microbial strain identifiers