Strain identifier
BacDive ID: 11774
Type strain: 
Species: Desulfosporosinus orientis
Strain history: <- NCIB; NCIMB 8382 <- M. E. Adams and J. R. Postgate, National Chemical Laboratory, Teddington, Middlesex, U.K.; Singapore I (Desulfovibrio orientis) {1957}
NCBI tax ID(s): 768706 (strain), 1563 (species)
version 8.1 (current version)
General
@ref: 435
BacDive-ID: 11774
DSM-Number: 765
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, motile
description: Desulfosporosinus orientis DSM 765 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from soil.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 768706 | strain |
| 1563 | species |
strain history
- @ref: 435
- history: <- NCIB; NCIMB 8382 <- M. E. Adams and J. R. Postgate, National Chemical Laboratory, Teddington, Middlesex, U.K.; Singapore I (Desulfovibrio orientis) {1957}
doi: 10.13145/bacdive11774.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Desulfitobacteriaceae
- genus: Desulfosporosinus
- species: Desulfosporosinus orientis
- full scientific name: Desulfosporosinus orientis (Campbell and Postgate 1965) Stackebrandt et al. 1997
synonyms
- @ref: 20215
- synonym: Desulfotomaculum orientis
@ref: 435
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Peptococcaceae
genus: Desulfosporosinus
species: Desulfosporosinus orientis
full scientific name: Desulfosporosinus orientis (Campbell and Postgate 1965) Stackebrandt et al. 1997
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 94.534 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 435
- name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)
- growth: yes
- link: https://mediadive.dsmz.de/medium/63
- composition: Name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63) Composition: MgSO4 x 7 H2O 2.0 g/l Na-DL-lactate 2.0 g/l NH4Cl 1.0 g/l Yeast extract 1.0 g/l Na2SO4 1.0 g/l FeSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l CaCl2 x 2 H2O 0.1 g/l Na-thioglycolate 0.1 g/l Ascorbic acid 0.1 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
- @ref: 435
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 435 | anaerobe | |
| 69480 | anaerobe | 97.924 |
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 100
Isolation, sampling and environmental information
isolation
- @ref: 435
- sample type: soil
- geographic location: Sungei Whampoa
- country: Singapore
- origin.country: SGP
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 435
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: D.orientis 16S rRNA gene, DSM 765, type strain
- accession: Y11570
- length: 1511
- database: ena
- NCBI tax ID: 768706
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Desulfosporosinus orientis DSM 765 | GCA_000235605 | complete | ncbi | 768706 |
| 66792 | Desulfosporosinus orientis DSM 765 | 768706.3 | complete | patric | 768706 |
| 66792 | Desulfosporosinus orientis Singapore I, DSM 765 | 2508501136 | complete | img | 768706 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 79 | no |
| motile | yes | 87.003 | no |
| flagellated | no | 53.765 | no |
| gram-positive | no | 73.329 | no |
| anaerobic | yes | 97.077 | no |
| aerobic | no | 95.926 | no |
| halophile | no | 96.07 | no |
| spore-forming | yes | 95.298 | no |
| thermophile | no | 97.786 | yes |
| glucose-util | yes | 74.324 | no |
| glucose-ferment | no | 77.755 | no |
External links
@ref: 435
culture collection no.: DSM 765, ATCC 19365, NCIMB 8382, VKM B-1628, Singapore I
straininfo link
- @ref: 80992
- straininfo: 92893
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 11211250 | Desulfosporosinus meridiei sp. nov., a spore-forming sulfate-reducing bacterium isolated from gasolene-contaminated groundwater. | Robertson WJ, Bowman JP, Franzmann PD, Mee BJ | Int J Syst Evol Microbiol | 10.1099/00207713-51-1-133 | 2001 | Bacterial Typing Techniques, Base Composition, Carbon/metabolism, Culture Media/chemistry, DNA, Bacterial/chemistry/genetics, Fatty Acids/analysis, *Gasoline, Nucleic Acid Hybridization/methods, Oxidation-Reduction, Phylogeny, Polymerase Chain Reaction, Random Amplified Polymorphic DNA Technique, Sodium Chloride/pharmacology, Spores, Bacterial/*physiology, Sulfates/metabolism, Sulfur-Reducing Bacteria/*classification/isolation & purification/physiology, Temperature, *Water Microbiology, *Water Pollution, Chemical | Metabolism |
| Phylogeny | 13130030 | Reclassification of Desulfotomaculum auripigmentum as Desulfosporosinus auripigmenti corrig., comb. nov. | Stackebrandt E, Schumann P, Schuler E, Hippe H | Int J Syst Evol Microbiol | 10.1099/ijs.0.02526-0 | 2003 | DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Molecular Sequence Data, Peptococcaceae/*classification/genetics/metabolism, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics | Genetics |
| Phylogeny | 17158969 | Desulfosporosinus lacus sp. nov., a sulfate-reducing bacterium isolated from pristine freshwater lake sediments. | Ramamoorthy S, Sass H, Langner H, Schumann P, Kroppenstedt RM, Spring S, Overmann J, Rosenzweig RF | Int J Syst Evol Microbiol | 10.1099/ijs.0.63610-0 | 2006 | Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/genetics, Fresh Water/*microbiology, Genes, rRNA, Geologic Sediments/*microbiology, Germany, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidation-Reduction, Peptococcaceae/*classification/genetics/isolation & purification/physiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, Sulfates/metabolism, Sulfur-Reducing Bacteria | Genetics |
| Phylogeny | 18450718 | Desulfosporosinus hippei sp. nov., a mesophilic sulfate-reducing bacterium isolated from permafrost. | Vatsurina A, Badrutdinova D, Schumann P, Spring S, Vainshtein M | Int J Syst Evol Microbiol | 10.1099/ijs.0.65368-0 | 2008 | Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Genomics, Genotype, Ice Cover/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidation-Reduction, Peptococcaceae/*classification/genetics/isolation & purification/metabolism, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Siberia, Species Specificity, Sulfates/*metabolism | Genetics |
| Genetics | 23105050 | Complete genome sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T. | Pester M, Brambilla E, Alazard D, Rattei T, Weinmaier T, Han J, Lucas S, Lapidus A, Cheng JF, Goodwin L, Pitluck S, Peters L, Ovchinnikova G, Teshima H, Detter JC, Han CS, Tapia R, Land ML, Hauser L, Kyrpides NC, Ivanova NN, Pagani I, Huntmann M, Wei CL, Davenport KW, Daligault H, Chain PS, Chen A, Mavromatis K, Markowitz V, Szeto E, Mikhailova N, Pati A, Wagner M, Woyke T, Ollivier B, Klenk HP, Spring S, Loy A | J Bacteriol | 10.1128/JB.01392-12 | 2012 | DNA, Bacterial/genetics, *Genome, Bacterial, Molecular Sequence Data, Peptococcaceae/*classification/*genetics, Species Specificity | Phylogeny |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 435 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 765) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-765 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 80992 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID92893.1 | StrainInfo: A central database for resolving microbial strain identifiers |