Strain identifier

BacDive ID: 11746

Type strain: Yes

Species: Pasteurella oralis

Strain Designation: P683, strain 23193

Strain history: <- CCM <- H. Christensen; P683

NCBI tax ID(s): 1071947 (species)

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General

@ref: 18215

BacDive-ID: 11746

DSM-Number: 26425

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, ovoid-shaped

description: Pasteurella oralis P683 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from a cat bite of a human.

NCBI tax id

  • NCBI tax id: 1071947
  • Matching level: species

strain history

  • @ref: 18215
  • history: <- CCM <- H. Christensen; P683

doi: 10.13145/bacdive11746.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Pasteurella
  • species: Pasteurella oralis
  • full scientific name: Pasteurella oralis Christensen et al. 2012

@ref: 18215

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Pasteurella

species: Pasteurella oralis

full scientific name: Pasteurella oralis Christensen et al. 2012

strain designation: P683, strain 23193

type strain: yes

Morphology

cell morphology

  • @ref: 30404
  • gram stain: negative
  • cell shape: ovoid-shaped
  • motility: no

colony morphology

@reftype of hemolysisincubation period
18215gamma1-2 days
470541 day

pigmentation

  • @ref: 30404
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 18215
  • name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/693
  • composition: Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
18215positivegrowth37mesophilic
30404positivegrowth22-37
47054positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 30404
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3040423652dextrin+carbon source
3040417306maltose+carbon source
3040418222xylose+carbon source
3040417632nitrate+reduction
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction
6837717634D-glucose+builds acid from
6837715824D-fructose+builds acid from
6837717306maltose+builds acid from
6837717992sucrose+builds acid from

metabolite production

@refChebi-IDmetaboliteproduction
3040435581indoleyes
6836935581indoleno

metabolite tests

@refChebi-IDmetaboliteindole test
3040435581indole+
6836935581indole-

enzymes

@refvalueactivityec
18215catalase+1.11.1.6
18215cytochrome-c oxidase+1.9.3.1
30404alkaline phosphatase+3.1.3.1
30404catalase+1.11.1.6
30404cytochrome oxidase+1.9.3.1
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase-3.2.1.23
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
47054-+---+----++---+----

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
18215+-------------------

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
18215+++++-+/-+---+-
47054-+++++--+---+
18215-+++++-+/-+---+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling dategeographic location
18215a cat bite of a humanCzech RepublicCZEEurope
47054Human wound,cat biteEurope1981Prague

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host#Human
#Host Body-Site#Other#Wound

taxonmaps

  • @ref: 69479
  • File name: preview.99_60106.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_18;96_21246;97_33240;98_42693;99_60106&stattab=map
  • Last taxonomy: Pasteurella oralis subclade
  • 16S sequence: M75052
  • Sequence Identity:
  • Total samples: 1645
  • soil counts: 1
  • aquatic counts: 16
  • animal counts: 1628

Safety information

risk assessment

  • @ref: 18215
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Pasteurella oralis strain P683 16S ribosomal RNA (rrs) gene, partial sequenceJQ9942731363ena1071947
30404Pasteurella oralis strain F12tonsilmale 16S ribosomal RNA gene, partial sequenceJN0502501371nuccore1071947
18215Pasteurella oralis strain CCUG 19794 16S ribosomal RNA gene, partial sequenceM750521486ena1071947

GC content

  • @ref: 30404
  • GC-content: 40

External links

@ref: 18215

culture collection no.: DSM 26425, CCM 7950, CCUG 19794, MCCM 00102

straininfo link

  • @ref: 80964
  • straininfo: 56172

literature

  • topic: Phylogeny
  • Pubmed-ID: 21841008
  • title: Classification of Pasteurella species B as Pasteurella oralis sp. nov.
  • authors: Christensen H, Bertelsen MF, Bojesen AM, Bisgaard M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.035246-0
  • year: 2011
  • mesh: Animals, Cats, DNA, Bacterial/genetics, Hedgehogs, Herpestidae, Humans, Molecular Sequence Data, Pasteurella/*classification/genetics/isolation & purification, Pasteurella Infections/*microbiology/*veterinary, Phylogeny, RNA, Ribosomal, 16S/genetics
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
18215Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26425)https://www.dsmz.de/collection/catalogue/details/culture/DSM-26425
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
30404Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604126741
47054Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 19794)https://www.ccug.se/strain?id=19794
68369Automatically annotated from API 20NE
68377Automatically annotated from API NH
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80964Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID56172.1StrainInfo: A central database for resolving microbial strain identifiers