Strain identifier

BacDive ID: 11734

Type strain: Yes

Species: Pasteurella mairii

Strain Designation: 68, A10, D1187, CNP 907

Strain history: CIP <- 1993, F. Escande, Inst. Pasteur, Paris, France: strain CNP 907 <- 1993, W. Mannheim, Inst. Med. Mikrobiol., Marburg, Germany: strain MCCM 00633, Pasteurella sp.: strain Mair

NCBI tax ID(s): 757 (species)

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General

@ref: 7014

BacDive-ID: 11734

DSM-Number: 17480

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, animal pathogen

description: Pasteurella mairii 68 is a facultative anaerobe, mesophilic, Gram-negative animal pathogen that was isolated from porcine fetus.

NCBI tax id

  • NCBI tax id: 757
  • Matching level: species

strain history

@refhistory
7014<- CCUG <- NCTC <- N. S. Mair
120751CIP <- 1993, F. Escande, Inst. Pasteur, Paris, France: strain CNP 907 <- 1993, W. Mannheim, Inst. Med. Mikrobiol., Marburg, Germany: strain MCCM 00633, Pasteurella sp.: strain Mair

doi: 10.13145/bacdive11734.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Pasteurella
  • species: Pasteurella mairii
  • full scientific name: Pasteurella mairii corrig. Sneath and Stevens 1990

  • synonyms

    • @ref: 20215
    • synonym: Pasteurella mairi

@ref: 7014

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Pasteurella

species: Pasteurella mairii

full scientific name: Pasteurella mairii Sneath and Stevens 1990 emend. Christensen et al. 2005

strain designation: 68, A10, D1187, CNP 907

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.993
120751negativerod-shapedno

colony morphology

  • @ref: 120751

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7014COLUMBIA BLOOD AGAR (DSMZ Medium 429)yeshttps://mediadive.dsmz.de/medium/429Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base
38154MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicolayesDistilled water make up to (1000.000 ml);Yeast extract (1.000 g);Tryptocasein soy agar (40.000 g)
120751CIP Medium 118-byeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=118-b

culture temp

@refgrowthtypetemperaturerange
7014positivegrowth37mesophilic
38154positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 120751
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.999

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin+builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
120751nitrate+reduction17632
120751nitrite-reduction16301
68377D-glucose+builds acid from17634
68377sucrose+builds acid from17992
68377ornithine+degradation18257
68377tryptophan-energy source27897

antibiotic resistance

  • @ref: 120751
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
12075135581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-test
6837735581indole-
12075115688acetoin-

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377ornithine decarboxylase+4.1.1.17
120751oxidase+
120751beta-galactosidase+3.2.1.23
120751alcohol dehydrogenase-1.1.1.1
120751catalase+1.11.1.6
120751lysine decarboxylase-4.1.1.18
120751ornithine decarboxylase+4.1.1.17
120751urease+3.5.1.5

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
120751---+-+---++++----+------+-----+------------------

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
7014++-+++-++/--+--
7014-++-+++-++/--+-

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
7014porcine fetusUnited KingdomGBREurope
48677Porcine foetus
120751Animal, Porcine, fetus

isolation source categories

  • Cat1: #Host
  • Cat2: #Mammals
  • Cat3: #Suidae (Pig,Swine)

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
7014yes2Risk group (German classification)
1207512Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Pasteurella mairii 16S ribosomal RNA gene, complete sequenceAF0245321485ena757
20218Pasteurella mairii strain CCUG 27189 16S ribosomal RNA gene, partial sequenceAY3629231362ena757
20218Pasteurella mairii 16S ribosomal RNA gene, partial sequenceAY634667489ena757
20218Pasteurella mairii strain CCUG 27189 16S ribosomal RNA gene, partial sequenceL060891485ena757

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792[Pasteurella] mairii NCTC10699GCA_900454475contigncbi757
66792[Pasteurella] mairii strain NCTC10699757.3wgspatric757
66792Pasteurella mairii NCTC 106992873991878draftimg757

GC content

  • @ref: 7014
  • GC-content: 43.4

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno91.23no
flagellatedno94.433no
gram-positiveno98.248no
anaerobicno97.082no
aerobicno89.837no
halophileno57.542no
spore-formingno98.501no
glucose-utilyes52.989no
thermophileno97.438yes
glucose-fermentyes57.798no

External links

@ref: 7014

culture collection no.: DSM 17480, ATCC 49633, CCUG 27189, CIP 103902, NCTC 10699, LPHL 5143/70

straininfo link

  • @ref: 80953
  • straininfo: 42593

literature

  • topic: Phylogeny
  • Pubmed-ID: 15653877
  • title: Emended description of porcine [Pasteurella] aerogenes, [Pasteurella] mairii and [Actinobacillus] rossii.
  • authors: Christensen H, Kuhnert P, Bisgaard M, Mutters R, Dziva F, Olsen JE
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.63119-0
  • year: 2005
  • mesh: Animals, Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Genotype, Molecular Sequence Data, Nucleic Acid Hybridization, Pasteurella/*classification/genetics, Pasteurella Infections/microbiology/*veterinary, Phenotype, RNA, Ribosomal, 16S/genetics, Swine/*microbiology, Swine Diseases/*microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7014Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17480)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17480
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38154Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15750
48677Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 27189)https://www.ccug.se/strain?id=27189
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
68377Automatically annotated from API NH
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
80953Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID42593.1StrainInfo: A central database for resolving microbial strain identifiers
120751Curators of the CIPCollection of Institut Pasteur (CIP 103902)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103902