Strain identifier

BacDive ID: 11706

Type strain: No

Species: Haemophilus influenzae

Strain history: <- National Culture Collection of Pathogens, South Korea; NCCP 13792 <- Korean National Institute of Health

NCBI tax ID(s): 727 (species)

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General

@ref: 18117

BacDive-ID: 11706

DSM-Number: 25829

keywords: genome sequence, Bacteria, microaerophile, mesophilic

description: Haemophilus influenzae DSM 25829 is a microaerophile, mesophilic bacterium that was isolated from human sputum.

NCBI tax id

  • NCBI tax id: 727
  • Matching level: species

strain history

  • @ref: 18117
  • history: <- National Culture Collection of Pathogens, South Korea; NCCP 13792 <- Korean National Institute of Health

doi: 10.13145/bacdive11706.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Haemophilus
  • species: Haemophilus influenzae
  • full scientific name: Haemophilus influenzae corrig. (Lehmann and Neumann 1896) Winslow et al. 1917 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Hemophilus influenzae
    20215Bacterium influenzae

@ref: 18117

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Haemophilus

species: Haemophilus influenzae

full scientific name: Haemophilus influenzae (Lehmann and Neumann 1896) Winslow et al. 1917

type strain: no

Morphology

colony morphology

  • @ref: 18117
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

  • @ref: 18117
  • name: HAEMOPHILUS MEDIUM (DSMZ Medium 804)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/804
  • composition: Name: HAEMOPHILUS MEDIUM (DSMZ Medium 804) Composition: Mueller-Hinton broth 21.0 g/l Yeast extract 5.0 g/l Distilled water

culture temp

  • @ref: 18117
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 18117
  • oxygen tolerance: microaerophile

antibiogram

@refmediumincubation temperatureincubation timeoxygen conditionPenicillin Goxacillinampicillinticarcillinmezlocillincefalotincefazolincefotaximeaztreonamimipenemtetracyclinechloramphenicolgentamycinamikacinvancomycinerythromycinlincomycinofloxacinnorfloxacincolistinpipemidic acidnitrofurantoinbacitracinpolymyxin bkanamycinneomycindoxycyclineceftriaxoneclindamycinfosfomycinmoxifloxacinlinezolidnystatinquinupristin/dalfopristinteicoplaninpiperacillin/tazobactam
18117Mueller-Hinton Agar371microaerophil001624-26123230444034364022241020-221036-38402024-264002026-2820324620-22503422-24020-22836
18117Mueller-Hinton Agar371microaerophil001624-26123230504440404624261024-2616-184040202640-42618-203020345026>504024024840

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837717634D-glucose+builds acid from
6837717306maltose-builds acid from
6837718257ornithine+degradation
6837727897tryptophan+energy source

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
18117catalase+1.11.1.6
18117cytochrome-c oxidase+1.9.3.1
68377tryptophan deaminase+4.1.99.1
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase-3.2.1.23
68377ornithine decarboxylase+4.1.1.17
68377beta-lactamase+3.5.2.6

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
18117++--++-+---++
18117++--++-+---++
18117+++--++-+---+
18117+++--++-+---+

Isolation, sampling and environmental information

isolation

  • @ref: 18117
  • sample type: human (68 years old) sputum
  • geographic location: Chungnam
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Sputum

Safety information

risk assessment

  • @ref: 18117
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Haemophilus influenzae strain FDAARGOS_1562727.3039completepatric727
66792Haemophilus influenzae strain FDAARGOS_1562727.3048completepatric727

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno91.985no
flagellatedno96.205no
gram-positiveno97.995no
anaerobicno96.222yes
aerobicno95.435yes
halophileyes55.952no
spore-formingno98.365no
thermophileno98.262yes
glucose-utilyes50.944no
glucose-fermentyes57.142no

External links

@ref: 18117

culture collection no.: DSM 25829, NCCP 13792

straininfo link

  • @ref: 80926
  • straininfo: 407286

Reference

@idauthorscataloguedoi/urltitle
18117Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25829)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25829
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68377Automatically annotated from API NH
80926Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID407286.1StrainInfo: A central database for resolving microbial strain identifiers