Strain identifier
BacDive ID: 11706
Type strain: 
Species: Haemophilus influenzae
Strain history: <- National Culture Collection of Pathogens, South Korea; NCCP 13792 <- Korean National Institute of Health
NCBI tax ID(s): 727 (species)
version 9.3 (current version)
General
@ref: 18117
BacDive-ID: 11706
DSM-Number: 25829
keywords: genome sequence, Bacteria, microaerophile, mesophilic
description: Haemophilus influenzae DSM 25829 is a microaerophile, mesophilic bacterium that was isolated from human sputum.
NCBI tax id
- NCBI tax id: 727
- Matching level: species
strain history
- @ref: 18117
- history: <- National Culture Collection of Pathogens, South Korea; NCCP 13792 <- Korean National Institute of Health
doi: 10.13145/bacdive11706.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pasteurellales
- family: Pasteurellaceae
- genus: Haemophilus
- species: Haemophilus influenzae
- full scientific name: Haemophilus influenzae corrig. (Lehmann and Neumann 1896) Winslow et al. 1917 (Approved Lists 1980)
synonyms
@ref synonym 20215 Hemophilus influenzae 20215 Bacterium influenzae
@ref: 18117
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pasteurellales
family: Pasteurellaceae
genus: Haemophilus
species: Haemophilus influenzae
full scientific name: Haemophilus influenzae (Lehmann and Neumann 1896) Winslow et al. 1917
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 125438 | no | 93.06 | |
| 125438 | 97.082 | negative | |
| 125439 | 96.7 | negative |
colony morphology
- @ref: 18117
- incubation period: 1-2 days
Culture and growth conditions
culture medium
- @ref: 18117
- name: HAEMOPHILUS MEDIUM (DSMZ Medium 804)
- growth: yes
- link: https://mediadive.dsmz.de/medium/804
- composition: Name: HAEMOPHILUS MEDIUM (DSMZ Medium 804) Composition: Mueller-Hinton broth 21.0 g/l Yeast extract 5.0 g/l Distilled water
culture temp
- @ref: 18117
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 18117 | microaerophile | |
| 125439 | obligate aerobe | 97.8 |
antibiogram
| @ref | medium | incubation temperature | incubation time | oxygen condition | Penicillin G | oxacillin | ampicillin | ticarcillin | mezlocillin | cefalotin | cefazolin | cefotaxime | aztreonam | imipenem | tetracycline | chloramphenicol | gentamycin | amikacin | vancomycin | erythromycin | lincomycin | ofloxacin | norfloxacin | colistin | pipemidic acid | nitrofurantoin | bacitracin | polymyxin b | kanamycin | neomycin | doxycycline | ceftriaxone | clindamycin | fosfomycin | moxifloxacin | linezolid | nystatin | quinupristin/dalfopristin | teicoplanin | piperacillin/tazobactam |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18117 | Mueller-Hinton Agar | 37 | 1 | microaerophil | 0 | 0 | 16 | 24-26 | 12 | 32 | 30 | 44 | 40 | 34 | 36 | 40 | 22 | 24 | 10 | 20-22 | 10 | 36-38 | 40 | 20 | 24-26 | 40 | 0 | 20 | 26-28 | 20 | 32 | 46 | 20-22 | 50 | 34 | 22-24 | 0 | 20-22 | 8 | 36 |
| 18117 | Mueller-Hinton Agar | 37 | 1 | microaerophil | 0 | 0 | 16 | 24-26 | 12 | 32 | 30 | 50 | 44 | 40 | 40 | 46 | 24 | 26 | 10 | 24-26 | 16-18 | 40 | 40 | 20 | 26 | 40-42 | 6 | 18-20 | 30 | 20 | 34 | 50 | 26 | >50 | 40 | 24 | 0 | 24 | 8 | 40 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125438 | no | 91.416 |
| 125439 | no | 96.1 |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68377 | 27897 | tryptophan | + | energy source |
| 68377 | 18257 | ornithine | + | degradation |
| 68377 | 17306 | maltose | - | builds acid from |
| 68377 | 17634 | D-glucose | + | builds acid from |
metabolite production
- @ref: 68377
- Chebi-ID: 35581
- metabolite: indole
- production: yes
metabolite tests
- @ref: 68377
- Chebi-ID: 35581
- metabolite: indole
- indole test: +
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 18117 | catalase | + | 1.11.1.6 |
| 18117 | cytochrome-c oxidase | + | 1.9.3.1 |
| 68377 | tryptophan deaminase | + | 4.1.99.1 |
| 68377 | proline-arylamidase | - | 3.4.11.5 |
| 68377 | beta-galactosidase | - | 3.2.1.23 |
| 68377 | ornithine decarboxylase | + | 4.1.1.17 |
| 68377 | beta-lactamase | + | 3.5.2.6 |
API NH
| @ref | PEN | GLU | FRU | MAL | SAC | ODC | URE | LIP | PAL | beta GAL | ProA | GGT | IND |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18117 | + | + | - | - | + | + | - | + | - | - | - | + | + |
| 18117 | + | + | - | - | + | + | - | + | - | - | - | + | + |
| 18117 | + | + | + | - | - | + | + | - | + | - | - | - | + |
| 18117 | + | + | + | - | - | + | + | - | + | - | - | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 18117
- sample type: human (68 years old) sputum
- geographic location: Chungnam
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body Product | #Fluids | #Sputum |
Safety information
risk assessment
- @ref: 18117
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Haemophilus influenzae strain FDAARGOS_1562 | 727.3039 | complete | patric | 727 |
| 66792 | Haemophilus influenzae strain FDAARGOS_1562 | 727.3048 | complete | patric | 727 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.082 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.803 | yes |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 91.416 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 89.898 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 96.5 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 93.06 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 96.1 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 58.2 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 96.7 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 97.8 |
External links
@ref: 18117
culture collection no.: DSM 25829, NCCP 13792
straininfo link
- @ref: 80926
- straininfo: 407286
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 18117 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25829) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25829 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 68377 | Automatically annotated from API NH | |||
| 80926 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID407286.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |