Strain identifier

BacDive ID: 11678

Type strain: No

Species: Actinobacillus lignieresii

Strain Designation: CM 2

Strain history: R. Sakazaki <-- ATCC 19393 <-- NCTC 4976 <-- P. H. Martin (CM-2).

NCBI tax ID(s): 720 (species)

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General

@ref: 8307

BacDive-ID: 11678

DSM-Number: 19770

keywords: 16S sequence, Bacteria, microaerophile, mesophilic, human pathogen

description: Actinobacillus lignieresii CM 2 is a microaerophile, mesophilic human pathogen that was isolated from bovine lesion.

NCBI tax id

  • NCBI tax id: 720
  • Matching level: species

strain history

@refhistory
8307<- JCM <- R. Sakazaki <- ATCC <- NCTC <- P. H. Martin; CM 2
67770R. Sakazaki <-- ATCC 19393 <-- NCTC 4976 <-- P. H. Martin (CM-2).

doi: 10.13145/bacdive11678.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Actinobacillus
  • species: Actinobacillus lignieresii
  • full scientific name: Actinobacillus lignieresii Brumpt 1910 (Approved Lists 1980)

@ref: 8307

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Actinobacillus

species: Actinobacillus lignieresii

full scientific name: Actinobacillus lignieresii Brumpt 1910

strain designation: CM 2

type strain: no

Culture and growth conditions

culture medium

  • @ref: 8307
  • name: BHI MEDIUM (DSMZ Medium 215)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/215
  • composition: Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8307positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 8307
  • oxygen tolerance: microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837717634D-glucose+builds acid from
6837715824D-fructose+builds acid from
6837717306maltose+builds acid from
6837727897tryptophan-energy source

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
8307catalase+1.11.1.6
8307cytochrome-c oxidase+1.9.3.1
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase-3.2.1.23

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
8307++++-+-+/------
8307-++++-+-+/-----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
8307bovine lesionLondonUnited KingdomGBREurope
47747Bovine
67770Typical bovine lesion

isolation source categories

  • Cat1: #Host
  • Cat2: #Mammals
  • Cat3: #Bovinae (Cow, Cattle)

taxonmaps

  • @ref: 69479
  • File name: preview.99_217.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_18;96_155;97_166;98_185;99_217&stattab=map
  • Last taxonomy: Actinobacillus
  • 16S sequence: LC383927
  • Sequence Identity:
  • Total samples: 6023
  • soil counts: 221
  • aquatic counts: 203
  • animal counts: 5580
  • plant counts: 19

Safety information

risk assessment

  • @ref: 8307
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218A.lignieresii 16S rRNA, V3-V4-V5 variable regions, segment 1M23310100ena720
20218A.lignieresii 16S rRNA, V3-V4-V5 variable regions, segment 2M23311345ena720
8307A.lignieresii 16S ribosomal RNAM350171486ena720
67770Actinobacillus lignieresii JCM 2431 gene for 16S ribosomal RNA, partial sequenceLC3839271464ena720

External links

@ref: 8307

culture collection no.: DSM 19770, ATCC 19363, JCM 2431, NCTC 4976, CCUG 23133, ATCC 19393

straininfo link

  • @ref: 80898
  • straininfo: 351

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8307Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19770)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19770
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
47747Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 23133)https://www.ccug.se/strain?id=23133
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68377Automatically annotated from API NH
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80898Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID351.1StrainInfo: A central database for resolving microbial strain identifiers