Strain identifier
BacDive ID: 11629
Type strain: 
Species: Paenibacillus woosongensis
Strain Designation: YB-45
Strain history: CIP <- 2013, DSMZ <- Kh. Yoon, Korea: strain YB-45
NCBI tax ID(s): 307580 (species)
version 8.1 (current version)
General
@ref: 6586
BacDive-ID: 11629
DSM-Number: 16971
keywords: 16S sequence, Bacteria, facultative anaerobe, spore-forming, mesophilic, Gram-variable, motile, rod-shaped
description: Paenibacillus woosongensis YB-45 is a facultative anaerobe, spore-forming, mesophilic bacterium that was isolated from forest soil.
NCBI tax id
- NCBI tax id: 307580
- Matching level: species
strain history
| @ref | history |
|---|---|
| 6586 | <- K.-H. Yoon, YB-45 |
| 67771 | <- KH Yoon, Woosong Univ. |
| 123960 | CIP <- 2013, DSMZ <- Kh. Yoon, Korea: strain YB-45 |
doi: 10.13145/bacdive11629.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus woosongensis
- full scientific name: Paenibacillus woosongensis Lee and Yoon 2008
@ref: 6586
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus woosongensis
full scientific name: Paenibacillus woosongensis Lee and Yoon 2008
strain designation: YB-45
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility |
|---|---|---|---|---|---|
| 32342 | variable | 3.75 µm | 0.6 µm | rod-shaped | yes |
| 67771 | rod-shaped | yes | |||
| 67771 | variable | ||||
| 123960 | positive | rod-shaped | yes |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 6586 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | https://mediadive.dsmz.de/medium/220 | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water |
| 33581 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
| 123960 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 6586 | positive | growth | 30 | mesophilic |
| 32342 | positive | growth | 28-47 | |
| 32342 | positive | optimum | 37 | mesophilic |
| 33581 | positive | growth | 30 | mesophilic |
| 67771 | positive | growth | 35 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 32342 | positive | growth | 6-10.6 | alkaliphile |
| 32342 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 32342 | facultative anaerobe |
| 67771 | facultative anaerobe |
spore formation
- @ref: 32342
- spore formation: yes
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 32342 | NaCl | positive | growth | 0-3 % |
| 32342 | NaCl | positive | optimum | 3 % |
murein
- @ref: 6586
- murein short key: A31
- type: A1gamma m-Dpm-direct
observation
- @ref: 67771
- observation: quinones: MK-7
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 32342 | 58143 | 5-dehydro-D-gluconate | + | carbon source |
| 32342 | 22599 | arabinose | + | carbon source |
| 32342 | 28757 | fructose | + | carbon source |
| 32342 | 28260 | galactose | + | carbon source |
| 32342 | 24265 | gluconate | + | carbon source |
| 32342 | 17234 | glucose | + | carbon source |
| 32342 | 26546 | rhamnose | + | carbon source |
| 32342 | 33942 | ribose | + | carbon source |
| 32342 | 17151 | xylitol | + | carbon source |
| 32342 | 18222 | xylose | + | carbon source |
| 32342 | 4853 | esculin | + | hydrolysis |
enzymes
- @ref: 32342
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 6586 | forest soil | Daejon | Republic of Korea | KOR | Asia |
| 67771 | From forest soil | Daejeon | Republic of Korea | KOR | Asia |
| 123960 | Environment, Soil, forest | Daejeon | Republic of Korea | KOR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Forest |
| #Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_23249.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_10569;97_12779;98_15718;99_23249&stattab=map
- Last taxonomy: Paenibacillus woosongensis subclade
- 16S sequence: AY847463
- Sequence Identity:
- Total samples: 309
- soil counts: 162
- aquatic counts: 21
- animal counts: 53
- plant counts: 73
Safety information
risk assessment
| @ref | biosafety level | biosafety level comment |
|---|---|---|
| 6586 | 1 | Risk group (German classification) |
| 123960 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 6586
- description: Paenibacillus woosongensis strain YB-45 16S ribosomal RNA gene, partial sequence
- accession: AY847463
- length: 1511
- database: ena
- NCBI tax ID: 307580
GC content
- @ref: 6586
- GC-content: 51.7
External links
@ref: 6586
culture collection no.: DSM 16971, CIP 110595, KCTC 3953
straininfo link
- @ref: 80854
- straininfo: 232160
literature
- topic: Phylogeny
- Pubmed-ID: 18319465
- title: Paenibacillus woosongensis sp. nov., a xylanolytic bacterium isolated from forest soil.
- authors: Lee JC, Yoon KH
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.65350-0
- year: 2008
- mesh: Bacteria/*classification/genetics/isolation & purification/metabolism, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity, *Trees, Xylans/*metabolism
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 6586 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16971) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16971 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 32342 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28574 | 28776041 | |
| 33581 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/30396 | ||||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 80854 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID232160.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 123960 | Curators of the CIP | Collection of Institut Pasteur (CIP 110595) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110595 |