Strain identifier

BacDive ID: 11614

Type strain: Yes

Species: Paenibacillus xinjiangensis

Strain Designation: B 538, 23.101

Strain history: CIP <- 2007, DSMZ <- KRIBB: strain B 538

NCBI tax ID(s): 306544 (species)

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General

@ref: 6585

BacDive-ID: 11614

DSM-Number: 16970

keywords: 16S sequence, Bacteria, aerobe, mesophilic, motile, rod-shaped

description: Paenibacillus xinjiangensis B 538 is an aerobe, mesophilic, motile bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 306544
  • Matching level: species

strain history

@refhistory
6585<- C.-J. Kim <- J.-M. Lim; B 538
67771<- CJ Kim, KRIBB <- JM Lim, KRIBB
123985CIP <- 2007, DSMZ <- KRIBB: strain B 538

doi: 10.13145/bacdive11614.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus xinjiangensis
  • full scientific name: Paenibacillus xinjiangensis Lim et al. 2006

@ref: 6585

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus xinjiangensis

full scientific name: Paenibacillus xinjiangensis Lim et al. 2006

strain designation: B 538, 23.101

type strain: yes

Morphology

cell morphology

@refcell shapemotilitygram stain
67771rod-shapedyes
67771positive
123985rod-shapedyespositive

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6585CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
39781MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123985CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
6585positivegrowth30mesophilic
39781positivegrowth30mesophilic
67771positivegrowth35mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
67771aerobe
123985obligate aerobe

observation

  • @ref: 67771
  • observation: quinones: MK-7

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 2-ketogluconate-builds acid from
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371xylitol-builds acid from17151
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-sorbose-builds acid from17266
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
123985nitrate-reduction17632
123985nitrite-reduction16301

metabolite production

  • @ref: 123985
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
123985oxidase+
123985catalase+1.11.1.6
123985urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123985--++--------++-++---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
123985+/---+/-+/-+/---+/-+/-+/-+/-+/--+/-----+/-+/-+/-+/-+/-+/-+/-+/-+/-+/-+/-+/-+/-+/-+/-+/-+/-+/--+/-+/----+/---+/--+/-

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
6585soilRepublic of KoreaKORAsia
67771From alkaline soil(pH?9.0)ChinaCHNAsiaHeshuo area, Xinjiang province
123985Environment, SoilChinaCHNAsiaXinjiang

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
65851Risk group (German classification)
1239851Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6585
  • description: Paenibacillus xinjiangensis strain B538 16S ribosomal RNA gene, partial sequence
  • accession: AY839868
  • length: 1521
  • database: ena
  • NCBI tax ID: 306544

GC content

@refGC-content
658547
6777147.0

External links

@ref: 6585

culture collection no.: DSM 16970, CIP 109466, KCTC 3952

straininfo link

  • @ref: 80840
  • straininfo: 232159

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17082394Paenibacillus xinjiangensis sp. nov., isolated from Xinjiang province in China.Lim JM, Jeon CO, Park DJ, Xu LH, Jiang CL, Kim CJInt J Syst Evol Microbiol10.1099/ijs.0.64465-02006Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis/chemistry, Genes, rRNA, Gram-Positive Endospore-Forming Rods/*classification/cytology/*isolation & purification/physiology, Hydrogen-Ion Concentration, Molecular Sequence Data, Movement, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis/chemistry, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Soil Microbiology, TemperatureGenetics
Phylogeny22941303Paenibacillus catalpae sp. nov., isolated from the rhizosphere soil of Catalpa speciosa.Zhang J, Wang ZT, Yu HM, Ma YInt J Syst Evol Microbiol10.1099/ijs.0.040659-02012Bacterial Typing Techniques, Base Composition, Bignoniaceae/*microbiology, China, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/analysisGenetics

Reference

@idauthorscataloguedoi/urltitle
6585Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16970)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16970
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
39781Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7212
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
80840Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID232159.1StrainInfo: A central database for resolving microbial strain identifiers
123985Curators of the CIPCollection of Institut Pasteur (CIP 109466)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109466