Strain identifier
BacDive ID: 116
Type strain: 
Species: Acidithiobacillus ferrooxidans
Strain Designation: NFe-4
Strain history: <- B. M. Goebel; NFe-4 <- B. M. Goebel {1991}
NCBI tax ID(s): 920 (species)
version 8.1 (current version)
General
@ref: 3583
BacDive-ID: 116
DSM-Number: 9465
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Acidithiobacillus ferrooxidans NFe-4 is a mesophilic bacterium that was isolated from mine shaff water sample.
NCBI tax id
- NCBI tax id: 920
- Matching level: species
strain history
- @ref: 3583
- history: <- B. M. Goebel; NFe-4 <- B. M. Goebel {1991}
doi: 10.13145/bacdive116.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Acidithiobacillia
- order: Acidithiobacillales
- family: Acidithiobacillaceae
- genus: Acidithiobacillus
- species: Acidithiobacillus ferrooxidans
- full scientific name: Acidithiobacillus ferrooxidans (Temple and Colmer 1951) Kelly and Wood 2000
synonyms
- @ref: 20215
- synonym: Thiobacillus ferrooxidans
@ref: 3583
domain: Bacteria
phylum: Proteobacteria
class: Acidithiobacillia
order: Acidithiobacillales
family: Acidithiobacillaceae
genus: Acidithiobacillus
species: Acidithiobacillus ferrooxidans
full scientific name: Acidithiobacillus ferrooxidans (Temple and Colmer 1951) Kelly and Wood 2000
strain designation: NFe-4
type strain: no
Morphology
colony morphology
- @ref: 3583
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 3583
- name: ACIDIFERROBACTER (MS) MEDIUM (DSMZ Medium 670)
- growth: yes
- link: https://mediadive.dsmz.de/medium/670
- composition: Name: ACIDIFERROBACTER (MS) MEDIUM (DSMZ Medium 670) Composition: FeSO4 x 7 H2O 20.0 g/l (NH4)2SO4 2.0 g/l MgSO4 x 7 H2O 0.25 g/l K2HPO4 0.1 g/l KCl 0.1 g/l Distilled water
culture temp
- @ref: 3583
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 3583
- sample type: mine shaff water sample
- geographic location: Mount Isa
- country: Australia
- origin.country: AUS
- continent: Australia and Oceania
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Other | #Mine |
| #Environmental | #Aquatic |
taxonmaps
- @ref: 69479
- File name: preview.99_16623.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_163;96_544;97_628;98_885;99_16623&stattab=map
- Last taxonomy: Acidithiobacillus
- 16S sequence: Y11595
- Sequence Identity:
- Total samples: 73
- soil counts: 4
- aquatic counts: 68
- animal counts: 1
Safety information
risk assessment
- @ref: 3583
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Acidithiobacillus ferrooxidans 16S rRNA gene, strain DSM9465 | Y11595 | 1470 | ena | 920 |
| 3583 | Acidithiobacillus ferrooxidans (N-Fe4) partial 16S ribosomal RNA gene | X75267 | 1333 | ena | 920 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acidithiobacillus ferridurans DSM 9465 | GCA_018854615 | contig | ncbi | 1232575 |
| 66792 | Acidithiobacillus ferridurans strain DSM 9465 | 1232575.19 | wgs | patric | 1232575 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 80.913 | no |
| gram-positive | no | 98.119 | no |
| anaerobic | no | 95.729 | no |
| aerobic | no | 84.948 | no |
| halophile | no | 86.927 | no |
| spore-forming | no | 94.58 | no |
| glucose-util | yes | 55.473 | no |
| flagellated | no | 98.258 | no |
| thermophile | no | 98.435 | no |
| glucose-ferment | no | 87.206 | no |
External links
@ref: 3583
culture collection no.: DSM 9465
straininfo link
- @ref: 69799
- straininfo: 48621
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 3583 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9465) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-9465 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69799 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48621.1 | StrainInfo: A central database for resolving microbial strain identifiers |