Strain identifier

BacDive ID: 11556

Type strain: Yes

Species: Paenibacillus stellifer

Strain Designation: IS1

Strain history: CIP <- 2003, CCUG <- I. Suominen, Helsinki, Finland: strain IS1

NCBI tax ID(s): 169760 (species)

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General

@ref: 5368

BacDive-ID: 11556

DSM-Number: 14472

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive

description: Paenibacillus stellifer IS1 is an aerobe, spore-forming, mesophilic bacterium that was isolated from food packaging board.

NCBI tax id

  • NCBI tax id: 169760
  • Matching level: species

strain history

@refhistory
5368<- I. Suominen; IS1
67771<- CCUG <- I.Suominen,Helsinki,Finland
123305CIP <- 2003, CCUG <- I. Suominen, Helsinki, Finland: strain IS1

doi: 10.13145/bacdive11556.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus stellifer
  • full scientific name: Paenibacillus stellifer Suominen et al. 2003

@ref: 5368

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus stellifer

full scientific name: Paenibacillus stellifer Suominen et al. 2003

strain designation: IS1

type strain: yes

Morphology

cell morphology

@refgram stainmotilityconfidencecell shape
67771positive
69480yes90.633
69480positive100
123305positiveyesrod-shaped

colony morphology

  • @ref: 123305

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5368CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
37413MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123305CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
5368positivegrowth30mesophilic
37413positivegrowth30mesophilic
56824positivegrowth28-37mesophilic
67771positivegrowth37mesophilic
123305positivegrowth22-37
123305nogrowth10psychrophilic
123305nogrowth45thermophilic

culture pH

  • @ref: 123305
  • ability: positive
  • type: growth
  • pH: 6

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
56824aerobe
67771aerobe
123305facultative anaerobe

spore formation

@refspore formationconfidence
69481yes100
69480yes99.999
123305yes

halophily

@refsaltgrowthtested relationconcentration
123305NaClpositivegrowth0-2 %
123305NaClnogrowth4 %
123305NaClnogrowth6 %
123305NaClnogrowth8 %
123305NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate+builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose+builds acid from16634
68371melezitose+builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose+builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
123305citrate-carbon source16947
123305esculin+hydrolysis4853
123305hippurate+hydrolysis606565
123305nitrate-reduction17632
123305nitrite-reduction16301
123305nitrate+respiration17632

metabolite production

  • @ref: 123305
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12330515688acetoin-
12330517234glucose+

enzymes

@refvalueactivityec
123305oxidase-
123305beta-galactosidase+3.2.1.23
123305alcohol dehydrogenase-1.1.1.1
123305gelatinase-
123305amylase+
123305DNase-
123305caseinase-3.4.21.50
123305catalase+1.11.1.6
123305tween esterase-
123305gamma-glutamyltransferase-2.3.2.2
123305lecithinase-
123305lipase-
123305lysine decarboxylase-4.1.1.18
123305ornithine decarboxylase-4.1.1.17
123305protease-
123305urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123305--++-------+++-+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
123305---+-+---++++---------+-++++++++-++++-++-------+-

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
123305+-+++-+++--++--+-++-+++------------+--------------------+-----------------------------+------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
5368food packaging boardFinlandFINEurope
56824Food-packaging paperboard
67771From Food-packaging paperboardFinlandFINEurope
123305Food, Packaging paperboardFinlandFINEurope

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Food production
  • Cat3: #Food

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
53681Risk group (German classification)
1233051Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Paenibacillus stellifer partial 16S rRNA gene, strain IS
  • accession: AJ316013
  • length: 1519
  • database: ena
  • NCBI tax ID: 169760

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paenibacillus stellifer DSM 14472GCA_000758685completencbi169760
66792Paenibacillus stellifer DSM 14472169760.4completepatric169760
66792Paenibacillus stellifer DSM 144722639763138completeimg169760

GC content

  • @ref: 67771
  • GC-content: 55.6

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileyes86.967no
flagellatedyes85.125no
gram-positiveyes90.226yes
anaerobicno93.856no
aerobicyes79.218yes
halophileno94.005no
spore-formingyes96.361no
glucose-utilyes89.206no
thermophileno99.726no
glucose-fermentno81.13no

External links

@ref: 5368

culture collection no.: DSM 14472, CCUG 45566, CIP 108130, KCTC 3931, KCTC 3994

straininfo link

  • @ref: 80784
  • straininfo: 110397

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny13130020Paenibacillus stellifer sp. nov., a cyclodextrin-producing species isolated from paperboard.Suominen I, Sproer C, Kampfer P, Rainey FA, Lounatmaa K, Salkinoja-Salonen MInt J Syst Evol Microbiol10.1099/ijs.0.02277-02003Cyclodextrins/*biosynthesis, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Genes, Bacterial, Gram-Positive Endospore-Forming Rods/classification/genetics/*isolation & purification/*metabolism, Microscopy, Electron, Molecular Sequence Data, Paper, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/geneticsGenetics
Phylogeny17392223Paenibacillus zanthoxyli sp. nov., a novel nitrogen-fixing species isolated from the rhizosphere of Zanthoxylum simulans.Ma Y, Zhang J, Chen SInt J Syst Evol Microbiol10.1099/ijs.0.64652-02007DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Gram-Positive Endospore-Forming Rods/*classification/genetics/isolation & purification/physiology, Molecular Sequence Data, *Nitrogen Fixation, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Zanthoxylum/*microbiologyGenetics
Phylogeny34718908Paenibacillus sinensis sp. nov., a nitrogen-fixing species isolated from plant rhizospheres.Li Q, Li Y, Liu X, Chen SAntonie Van Leeuwenhoek10.1007/s10482-021-01677-62021Base Composition, DNA, Bacterial/genetics, Nitrogen, *Paenibacillus/genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5368Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14472)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14472
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
37413Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5719
56824Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 45566)https://www.ccug.se/strain?id=45566
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
80784Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID110397.1StrainInfo: A central database for resolving microbial strain identifiers
123305Curators of the CIPCollection of Institut Pasteur (CIP 108130)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108130