Strain identifier

BacDive ID: 11510

Type strain: No

Species: Paenibacillus curdlanolyticus

Strain Designation: YK161

Strain history: <- IFO

NCBI tax ID(s): 59840 (species)

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General

@ref: 3868

BacDive-ID: 11510

DSM-Number: 10248

keywords: 16S sequence, Bacteria, mesophilic

description: Paenibacillus curdlanolyticus YK161 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 59840
  • Matching level: species

strain history

  • @ref: 3868
  • history: <- IFO

doi: 10.13145/bacdive11510.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus curdlanolyticus
  • full scientific name: Paenibacillus curdlanolyticus (Kanzawa et al. 1995) Shida et al. 1997

  • synonyms

    • @ref: 20215
    • synonym: Bacillus curdlanolyticus

@ref: 3868

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus curdlanolyticus

full scientific name: Paenibacillus curdlanolyticus (Kanzawa et al. 1995) Shida et al. 1997

strain designation: YK161

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3868TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535; with strain-specific modifications) Composition: Trypticase soy broth 30.0 g/l Distilled water
3868NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 3868
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

compound production

  • @ref: 3868
  • compound: exo-(1-3)-ß-D glucanase

Isolation, sampling and environmental information

isolation

  • @ref: 3868
  • sample type: soil
  • geographic location: Kobe City
  • country: Japan
  • origin.country: JPN
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_4777.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_2361;97_2875;98_3580;99_4777&stattab=map
  • Last taxonomy: Paenibacillus curdlanolyticus subclade
  • 16S sequence: AB680949
  • Sequence Identity:
  • Total samples: 2460
  • soil counts: 1279
  • aquatic counts: 201
  • animal counts: 756
  • plant counts: 224

Safety information

risk assessment

  • @ref: 3868
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Paenibacillus curdlanolyticus gene for 16S rRNA, partial sequence, strain: NBRC 15726AB6809491478ena59840
20218Paenibacillus curdlanolyticus DNA for 16S rRNA, partial sequenceD885151415ena59840

GC content

  • @ref: 3868
  • GC-content: 50.3
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 3868

culture collection no.: DSM 10248, IFO 15726, NBRC 15726

straininfo link

  • @ref: 80742
  • straininfo: 48789

literature

  • topic: Phylogeny
  • Pubmed-ID: 8590679
  • title: Bacillus curdlanolyticus sp. nov. and Bacillus kobensis sp. nov., which hydrolyze resistant curdlan.
  • authors: Kanzawa Y, Harada A, Takeuchi M, Yokota A, Harada T
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-45-3-515
  • year: 1995
  • mesh: Aerobiosis, Bacillus/*classification/genetics/metabolism, Bacterial Proteins/chemistry, Base Composition, Carbohydrate Metabolism, Culture Media, DNA, Bacterial/chemistry/genetics, Electrophoresis, Polyacrylamide Gel, Fatty Acids/chemistry, Glucans/*metabolism, Nucleic Acid Hybridization, Polysaccharides, Bacterial/*metabolism, Sequence Homology, Nucleic Acid, *Soil Microbiology, Spores, *beta-Glucans
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3868Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10248)https://www.dsmz.de/collection/catalogue/details/culture/DSM-10248
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80742Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID48789.1StrainInfo: A central database for resolving microbial strain identifiers